PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

augustus_masked-scaffold01133-abinit-gene-0.2-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 192aa MW: 22284.3 Da PI: 6.3615

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
augustus_masked-scaffold01133-abinit-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.9	5.2e-26	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr.tra 56 +fY +Y++++GF+vr++++++s++n+ ++ ++fvCskeg+re++ ++++ + + augustus_masked-scaffold01133-abinit-gene-0.2-mRNA-1 78 EFYIAYGRRIGFTVRIHHNRRSRMNNMVIGQDFVCSKEGFREKKYVYRKDRVLpSPP 134 6****************************************99883333334789 PP FAR1 57 etrtgCkaklkvkkekdgkwevtkleleHnHela 90 tr gC a+l++ +++ +kw+vtk+ +eHnH+l augustus_masked-scaffold01133-abinit-gene-0.2-mRNA-1 135 LTREGCPAMLRLALRDGEKWVVTKFIQEHNHTLL 168 9****************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.3E-23	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MESPSNQAFD SDESEKCLQI ESFVEHEFAD YDLSKDVDAC IGEIDKIVEQ PNESFPLIGN 60 VLEPYIGMEF KSRDDAREFY IAYGRRIGFT VRIHHNRRSR MNNMVIGQDF VCSKEGFREK 120 KYVYRKDRVL PSPPLTREGC PAMLRLALRD GEKWVVTKFI QEHNHTLLSP SKVPWRGSGK 180 SMISELYGVN WL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023885205.1	1e-137	protein FAR1-RELATED SEQUENCE 8-like
TrEMBL	A0A2I4EFP3	1e-115	A0A2I4EFP3_JUGRE; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_002527269.1	1e-107	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-26	FAR1 family protein