PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02967-snap-gene-0.23-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 245aa    MW: 28246.5 Da    PI: 9.3848
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02967-snap-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.93.2e-0826773890
                                       FAR1 38 egkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                                               +g+r + ++++e+++  +aetr+gCka++ +kk  d++w + k+++  nHel 
  maker-scaffold02967-snap-gene-0.23-mRNA-1 26 KGFRLQCNEDNERTSLDHAETRVGCKATIGLKKV-DDTWIICKFVEGQNHELL 77
                                               57777777888899999****************9.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.0E-53377IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVFDNLEDAH AYYNAYARQK GFSILKGFRL QCNEDNERTS LDHAETRVGC KATIGLKKVD  60
DTWIICKFVE GQNHELLTPK STSLLRGHRV ITSAQKNLIN ALNKSSIAPS KIMFVLSKES  120
GGDYNLEAKI AKVYTKKMFM KFKEELFCSK KYKASKYCEE DIQGGSSWER KHIFAIFVKK  180
SLVHFFPSHY ILQRWTINAK KHIVHDIFVA EAGSQSEKKY KHLGQILQKV HEELLAMQDV  240
YDVDD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879877.16e-54protein FAR1-RELATED SEQUENCE 5-like
STRINGMigut.G01330.1.p7e-32(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1463426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-18FAR1-related sequence 5