PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID augustus_masked-scaffold01133-abinit-gene-0.3-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 150aa    MW: 17201.6 Da    PI: 10.2656
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
augustus_masked-scaffold01133-abinit-gene-0.3-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.69.9e-193741990
                                                  FAR1 19 skkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwe 77
                                                           ++s  +g++  r++ C+k+g++ +++ +   e+++r++ r gCka++ vk+ek+gkw+
  augustus_masked-scaffold01133-abinit-gene-0.3-mRNA-1  3 RRRSGIDGRTLARRLGCNKQGFSPNHRGTVGPEKKPRPSAREGCKATILVKMEKSGKWV 61
                                                          5677889999*******************9***************************** PP

                                                  FAR1 78 vtkleleHnHela 90
                                                          v+++e+eHnH+l+
  augustus_masked-scaffold01133-abinit-gene-0.3-mRNA-1 62 VSRFEKEHNHPLV 74
                                                          ***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-16374IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MQRRRSGIDG RTLARRLGCN KQGFSPNHRG TVGPEKKPRP SAREGCKATI LVKMEKSGKW  60
VVSRFEKEHN HPLVVTANGF STSGDKDKKI EELTMELERQ EQLCAAYREK LLSFMNNVED  120
ETEELSSKIQ VIVDNVRKVE SEVQKHSRHR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885198.11e-108protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2N9HYE41e-102A0A2N9HYE4_FAGSY; Uncharacterized protein
STRINGXP_010095602.14e-98(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.13e-58FAR1 family protein