PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold09963-snap-gene-0.13-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 404aa    MW: 47176.5 Da    PI: 7.7653
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold09963-snap-gene-0.13-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.77.8e-1839125290
                                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 
                                                 Yn+YA ++ Fs++k k ++ + +++i +r+f Cskeg++ +e+   e+++ ++ etr+g ka ++  
  maker-scaffold09963-snap-gene-0.13-mRNA-1  39 LYNNYALQTSFSIQKGKPRYFNGTKNIRQREFLCSKEGFKIDEDPC-EEKNWKKLETRIGYKAFIRFI 105
                                                7***************************************999988.89999***************9 PP

                                       FAR1  70 kekdgkwevtkleleHnHela 90 
                                                 e +++w+vt ++ +HnHela
  maker-scaffold09963-snap-gene-0.13-mRNA-1 106 VE-NDVWRVTAFNPKHNHELA 125
                                                99.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1539125IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
CNSSDIEGIE DCLFVERLQN SDDNLLDKVA YTENEAYNLY NNYALQTSFS IQKGKPRYFN  60
GTKNIRQREF LCSKEGFKID EDPCEEKNWK KLETRIGYKA FIRFIVENDV WRVTAFNPKH  120
NHELALPSER RLLRSSHCIS KPKTGLIDSI VNASIHTKNT YLYLTEEVGG KLEFQNTWDK  180
MMHKFNLEDH HWLNMITAFT KDSFTAEFKA SSRSESTNHI LNNIVETTIS LTNFVIKYES  240
VLAGMHSSKF NEDFRCKQGA PQRAVKKSGI LGHATQVYTC KIFKLFEYEF LNSLAIEWKQ  300
VDCQDTIDVF EVKEEDSQRV RIVHFDHFNS NMKKYESLRI LCCHALRVFN LKNLTKIPSQ  360
YILKHWTKEA KKGMMAYEQD NHSSSNAKEA EIVWRNSMLQ DSVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873391.11e-143protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2N9ET881e-113A0A2N9ET88_FAGSY; Uncharacterized protein
TrEMBLA0A2N9FSL81e-118A0A2N9FSL8_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-22FAR1-related sequence 5