PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00625-snap-gene-0.46-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 163aa MW: 19297 Da PI: 7.8628 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40.4 | 9.7e-13 | 12 | 84 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 Yn+YA ++GFsvrk+k ++ k+g+++++++ ++++ + +trtgC+a++ + + maker-scaffold00625-snap-gene-0.46-mRNA-1 12 LYNDYAIRIGFSVRKEKLRYA--------------KNGFPRDSDHL-DDKKFKILQTRTGCEASFLFTVT 66 7**************998887..............78999998888.8899999**************99 PP FAR1 72 kdgkwevtkleleHnHela 90 +g+w+vt+++ +HnHela maker-scaffold00625-snap-gene-0.46-mRNA-1 67 -NGEWKVTHFNPNHNHELA 84 .****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-10 | 12 | 84 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MVVHSEEEAY KLYNDYAIRI GFSVRKEKLR YAKNGFPRDS DHLDDKKFKI LQTRTGCEAS 60 FLFTVTNGEW KVTHFNPNHN HELAKPEKRP FLRSESTNNV FQHMTCKIMR LIEFVHEYEK 120 ASKNMHTEEL EEDFRCKQGT SFQIVQNCGL FATCIICIYL YNV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023880098.1 | 8e-53 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A2N9J938 | 8e-39 | A0A2N9J938_FAGSY; Uncharacterized protein | ||||
STRING | XP_008229713.1 | 3e-26 | (Prunus mume) | ||||
STRING | XP_008359347.1 | 8e-26 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-09 | FAR1 family protein |