PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold03837-snap-gene-0.21-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 403aa MW: 45756.4 Da PI: 8.2634

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold03837-snap-gene-0.21-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.1	8.3e-25	68	154	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 +Yn+YA++ GFs+r+++++k+ +++ + ++vCskeg+r++ +++++k+ +raetr+gCka++ +k maker-scaffold03837-snap-gene-0.21-mRNA-1 68 YYNAYARRKGFSIRVNHTRKN-KDKIRVGIEYVCSKEGFRRQCNEDNKKTGPERAETRVGCKAMIGLK 134 8**************9999.66668999************999999************** PP FAR1 70 kekdgkwevtkleleHnHela 90 k d++w v k+++ HnHel maker-scaffold03837-snap-gene-0.21-mRNA-1 135 KV-DDTWIVCKFVESHNHELL 154 9.9**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-21	68	154	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.274	195	233	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-7	207	230	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.8E-4	208	235	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MSANNKEPET VSLCDMVDDL VHDESEINED QNNVDLSLDD SNQPFACNRH SEPHLDMVFE 60 NLEAAYAYYN AYARRKGFSI RVNHTRKNKD KIRVGIEYVC SKEGFRRQCN EDNKKTGPER 120 AETRVGCKAM IGLKKVDDTW IVCKFVESHN HELLTPKSTS LLRGHRVITS AQKNLIDTLN 180 ESGIAPSKIM SVLSKESGVS LDIVETKAIC TCHMFEFVGI ICRHILAVFV KKSLVHFLPS 240 HYILERWTIN AKKHIVHDIS SDVVQVEPQV SSTMMRNSLM LQFLEVVEVG SQSEKQYKHL 300 GQTLRKVHEE LLAMQDVQDV DDLGSPDNTI LNSQVLSNPP MTLRDPPHVP SKGRPKALRQ 360 KHPKEKQLMK KRKCSICKET GHGCCKYKLD TTFRVNASTT KSN

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MSANNKEPET VSLCDMVDDL VHDESEINED QNNVDLSLDD SNQPFACNRH SEPHLDMVFE  60
NLEAAYAYYN AYARRKGFSI RVNHTRKNKD KIRVGIEYVC SKEGFRRQCN EDNKKTGPER  120
AETRVGCKAM IGLKKVDDTW IVCKFVESHN HELLTPKSTS LLRGHRVITS AQKNLIDTLN  180
ESGIAPSKIM SVLSKESGVS LDIVETKAIC TCHMFEFVGI ICRHILAVFV KKSLVHFLPS  240
HYILERWTIN AKKHIVHDIS SDVVQVEPQV SSTMMRNSLM LQFLEVVEVG SQSEKQYKHL  300
GQTLRKVHEE LLAMQDVQDV DDLGSPDNTI LNSQVLSNPP MTLRDPPHVP SKGRPKALRQ  360
KHPKEKQLMK KRKCSICKET GHGCCKYKLD TTFRVNASTT KSN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023879877.1	1e-120	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2N9EWC0	4e-82	A0A2N9EWC0_FAGSY; Uncharacterized protein
TrEMBL	A0A2N9FLB9	1e-85	A0A2N9FLB9_FAGSY; Uncharacterized protein
TrEMBL	A0A2N9GL14	2e-85	A0A2N9GL14_FAGSY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14634	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-23	FAR1-related sequence 5