PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold07778-snap-gene-0.20-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 314aa    MW: 36256.1 Da    PI: 8.3328
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold07778-snap-gene-0.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.32.2e-2289171290
                                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 
                                                fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +
  maker-scaffold07778-snap-gene-0.20-mRNA-1  89 FYNCYAKDQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFR 150
                                                9***************99997.66779**************99888.....***************** PP

                                       FAR1  70 kekdgkwevtkleleHnHela 90 
                                                ++++++w+++++e eHnH ++
  maker-scaffold07778-snap-gene-0.20-mRNA-1 151 LMDSKRWRIIEVEVEHNHLIS 171
                                                ******************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1989171IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
WLRPESKERT VRAEHCVTHA PLLRFHQLYS PAISPISEPV GDDDADGFEI EGDCAMTEYV  60
GQAGIIQGEN PLPPAVGMEF ESYEDVYYFY NCYAKDQGFG VRVSNTWYRK SKERYRGKLS  120
CSSAGFKKKS EANRPRPETR TGCPAMIKFR LMDSKRWRII EVEVEHNHLI SPKSGKFYKS  180
HKHLGVGTKR ALQLESAEEA QKIRLFRTTK HHLEDLADMN SRNSTYMLKS GSYFELQLSK  240
LYTNDILEMF KREVEGMYSC FSTRQLNADG PISTYIVKDQ VVEEGRKSED RYKFALQALD  300
QILNKLRLVD NQSM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879507.11e-115uncharacterized protein LOC111991932
TrEMBLA0A2H5QM011e-135A0A2H5QM01_CITUN; Uncharacterized protein
STRINGXP_008228718.11e-108(Prunus mume)
STRINGEMJ162091e-108(Prunus persica)
STRINGXP_002517670.11e-108(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.12e-41FAR1-related sequence 6