PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold13668-snap-gene-0.6-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 288aa    MW: 33100.3 Da    PI: 7.8675
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold13668-snap-gene-0.6-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.21.5e-14601242590
                                      FAR1  25 ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                                               ++  +  ++vC keg+ ++ ++++e+++ +r+etr+gCka++ +kk  d++w v k+++ HnHel 
  maker-scaffold13668-snap-gene-0.6-mRNA-1  60 DKIRVGIEYVCLKEGFCRQCNENNERTSPERVETRVGCKAMIGLKKV-DDTWIVCKFVEGHNHELL 124
                                               45556679***********9999999********************9.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1159124IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSANNKEPET ISLCDMVDDL VHDESEINED QNNVDLSLDD SNQHFACNRH SEPCLDMNKD  60
KIRVGIEYVC LKEGFCRQCN ENNERTSPER VETRVGCKAM IGLKKVDDTW IVCKFVEGHN  120
HELLTPKSTS LLSGHRVITS AKKNLLDTLN ELGIALSKIL SMLSKKSGEQ DVKTKNSVRI  180
LKTCYKLEAE AAEVYSRKMF MKFQGELFCS KKYKASKYLS LDIVETKTIC LRHMFEFVGI  240
ICRHILAVFV KKSLVHFLSS HYILERWTII AKKHIVHDIY SDVIMRSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879877.16e-93protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2N9EWC02e-54A0A2N9EWC0_FAGSY; Uncharacterized protein
TrEMBLA0A2N9FLB94e-57A0A2N9FLB9_FAGSY; Uncharacterized protein
TrEMBLA0A2N9GCD84e-54A0A2N9GCD8_FAGSY; Uncharacterized protein
TrEMBLA0A2N9GL146e-57A0A2N9GL14_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1463426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-18FAR1-related sequence 5