PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold15989-augustus-gene-0.9-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 388aa MW: 44734.5 Da PI: 7.0944

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold15989-augustus-gene-0.9-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.4	4.2e-22	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkak 65 ++Yn YAke+GF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+ maker-scaffold15989-augustus-gene-0.9-mRNA-1 60 NYYNCYAKEAGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAM 119 69***************************************9988.....99******* PP FAR1 66 lkvkkekdgkwevtkleleHnHel 89 +++++ ++++w++ ++ leHnH l maker-scaffold15989-augustus-gene-0.9-mRNA-1 120 IRMRLVDSKRWRILEVTLEHNHLL 143 ********************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-19	60	143	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.891	251	287	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-4	260	283	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	262	289	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MEEASLSSEP VPDSECNEIQ KEEDGVMTEL DYQNGLSEGR KEFVAPAVGM EFESYDDAYN 60 YYNCYAKEAG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI 120 RMRLVDSKRW RILEVTLEHN HLLGTKVYKS IKKMGSGTKR KSDSNSDAEV QTVKLYRALV 180 IDAGGNGGSN SNARELSKVY TREIFKKFQY EVEEMYSCFS TTQLHIDGPI VIFLVKERVL 240 GEGNRREIRD YEVLYNRTAG EVRCICSCFN FYGYLCRHAL CVLNFNGVEE VPPKYILSRW 300 KKDFKRLYIP DVGSGSVDAT DRVQWFNQLY RSALQVVEEG VISLDHYNVA LQAFEESLNR 360 VHDVDGRQAL PAFEESLNRV HDVESRQE

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MEEASLSSEP VPDSECNEIQ KEEDGVMTEL DYQNGLSEGR KEFVAPAVGM EFESYDDAYN  60
YYNCYAKEAG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAMI  120
RMRLVDSKRW RILEVTLEHN HLLGTKVYKS IKKMGSGTKR KSDSNSDAEV QTVKLYRALV  180
IDAGGNGGSN SNARELSKVY TREIFKKFQY EVEEMYSCFS TTQLHIDGPI VIFLVKERVL  240
GEGNRREIRD YEVLYNRTAG EVRCICSCFN FYGYLCRHAL CVLNFNGVEE VPPKYILSRW  300
KKDFKRLYIP DVGSGSVDAT DRVQWFNQLY RSALQVVEEG VISLDHYNVA LQAFEESLNR  360
VHDVDGRQAL PAFEESLNRV HDVESRQE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023879507.1	1e-128	uncharacterized protein LOC111991932
Swissprot	Q9SSQ4	4e-90	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A444ZDH7	0.0	A0A444ZDH7_ARAHY; Uncharacterized protein
TrEMBL	A0A445DIY0	0.0	A0A445DIY0_ARAHY; Uncharacterized protein
STRING	XP_009336308.1	1e-112	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-92	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]