PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01721-snap-gene-0.25-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 392aa MW: 45565.4 Da PI: 6.3292

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01721-snap-gene-0.25-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.1	8.4e-25	59	143	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 +fYn YAk+ GF +r+s+s +++++e +++++ Cs g++++++ + ++r+etrtgC a++++ maker-scaffold01721-snap-gene-0.25-mRNA-1 59 DFYNMYAKQQGFGIRVSNSWFRSKKKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVI 121 6***************************************99888.....9*********** PP FAR1 69 kkekdgkwevtkleleHnHela 90 ++ ++++w++ ++eleHnH+++ maker-scaffold01721-snap-gene-0.25-mRNA-1 122 RLVDSKRWRIVEVELEHNHQVS 143 *****************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-23	59	144	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.396	274	310	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.1E-4	282	307	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-6	285	312	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MEEVCLNSEP VFDEGDEYDV EGDCTLVEHD DETGETQSKK EPPSPTVGLE FDSFDEAYDF 60 YNMYAKQQGF GIRVSNSWFR SKKKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMIV 120 IRLVDSKRWR IVEVELEHNH QVSPQIKRFY KSHKKMILAA KKAQPSPEPV TEVHTIKLYR 180 TAVLEADHTG YSNFNEGINP VDNSKHLELK EGDAHAVQVS KVYTKEIFKR FQSEVEGMYS 240 CFNTRQVNVN GPIITYIVKE RVEVEGNEKE VKYYEVLYET TQVDIRCICS LFNYKGYLCR 300 HALNVLNYNG VEEIPSRYIL QRWSKDFKCR YLLDNKSGNI DVYNPMHWYN HLHKCALPIV 360 EEGAQSQEHY KIALQELEEL LNKFNNVAND FV

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MEEVCLNSEP VFDEGDEYDV EGDCTLVEHD DETGETQSKK EPPSPTVGLE FDSFDEAYDF  60
YNMYAKQQGF GIRVSNSWFR SKKKERYRAK LSCSSAGFKK KSEANNPRPE TRTGCPAMIV  120
IRLVDSKRWR IVEVELEHNH QVSPQIKRFY KSHKKMILAA KKAQPSPEPV TEVHTIKLYR  180
TAVLEADHTG YSNFNEGINP VDNSKHLELK EGDAHAVQVS KVYTKEIFKR FQSEVEGMYS  240
CFNTRQVNVN GPIITYIVKE RVEVEGNEKE VKYYEVLYET TQVDIRCICS LFNYKGYLCR  300
HALNVLNYNG VEEIPSRYIL QRWSKDFKCR YLLDNKSGNI DVYNPMHWYN HLHKCALPIV  360
EEGAQSQEHY KIALQELEEL LNKFNNVAND FV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023871682.1	1e-151	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A0B0MXF2	0.0	A0A0B0MXF2_GOSAR; Far1-related sequence 6-like protein
STRING	XP_008219518.1	1e-125	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	2e-53	FAR1-related sequence 6