PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | augustus_masked-scaffold07930-abinit-gene-0.1-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 28898.8 Da PI: 4.7797 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 53.1 | 1.1e-16 | 163 | 233 | 2 | 74 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraet 58 +Y++YA GFs+rk+ +ks+ ng +++r+++C+++g+r ++ ++ + r++r+et augustus_masked-scaffold07930-abinit-gene-0.1-mRNA-1 163 CYSRYAVLEGFSIRKDFVNKSRVNGAVVSRRYTCYRQGYRPTKYNS--NVRKSRQET 217 7***************************************999888..9999***** PP FAR1 59 rtgCkaklkvkkekdg 74 rtgC a++++ ++ +g augustus_masked-scaffold07930-abinit-gene-0.1-mRNA-1 218 RTGCLAHMTIARQPNG 233 **********999654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-14 | 163 | 233 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSTEGQMGSG EPNITGHPRE KDIENECQTS STLVIDTKQE SQSPKESFVE QGHVVVGGEH 60 ESQSPTVSSV DKSQVVIDSD HDSETPSVSS VDKSQEEIDG EDCQTPRVSN ISKFEMDIVG 120 EQECQNPNAI SAGVSVVVKS EDDVYAIPKV GMEFESEDDA YKCYSRYAVL EGFSIRKDFV 180 NKSRVNGAVV SRRYTCYRQG YRPTKYNSNV RKSRQETRTG CLAHMTIARQ PNGYVAEFQV 240 HQNGCCILHG AWQPELRSQI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023895087.1 | 1e-151 | protein FAR1-RELATED SEQUENCE 12-like | ||||
TrEMBL | A0A2N9F6M3 | 1e-137 | A0A2N9F6M3_FAGSY; Uncharacterized protein | ||||
STRING | XP_008230452.1 | 3e-84 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-14 | FAR1 family protein |