PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00469-snap-gene-0.42-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 399aa    MW: 45463.3 Da    PI: 9.6086
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00469-snap-gene-0.42-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1669.8e-21126210290
                                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 
                                                 Yn+YA ++GFsv+k+k ++   ++ + +r++vCskeg+++++++  ++++ ++ +tr++C+a+++  
  maker-scaffold00469-snap-gene-0.42-mRNA-1 126 LYNDYAIQIGFSVQKEKIRYA--KNVVGQRDYVCSKEGFPRDSDNL-DDKKFKNLQTRISCEASIRFI 190
                                                7****************9998..6679***************9998.99999***************9 PP

                                       FAR1  70 kekdgkwevtkleleHnHela 90 
                                                 + +g+w+v++++  HnHela
  maker-scaffold00469-snap-gene-0.42-mRNA-1 191 VT-NGEWKVIHFNPTHNHELA 210
                                                99.9***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.8E-18126210IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MARTRTRTAA QMSFGWRTRS VLGGSVLGGD DLDGDADKLP TATVGAISPV LGCDLGGAIG  60
GAILPVLQAA RSRRCWGATR PVRSRLWTVV RSTLQLLILQ SMRKVLKILK LCLEWWCIVR  120
MKHIKLYNDY AIQIGFSVQK EKIRYAKNVV GQRDYVCSKE GFPRDSDNLD DKKFKNLQTR  180
ISCEASIRFI VTNGEWKVIH FNPTHNHELA KLEERPFLRS NRKITDAQLG VIKTFKEASI  240
KTISAYSYLV EEAGGFENDA LLSDYNLVGN KWLNTLYENR ERWCSVFSHN IFSARMKASS  300
RSESVNNVFQ HMACKTMRLT KCVHKYEKAS KNMRVEELEE DFCCKQGTSS QIVKNCGLLE  360
HALSVYTRTF FKRFELEIAS TLGVTHQDVY YDGVSFTYE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874110.12e-83protein FAR1-RELATED SEQUENCE 5-like, partial
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-13FAR1-related sequence 5