PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold09066-snap-gene-0.12-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 198aa MW: 23092.3 Da PI: 9.6764 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 54.4 | 4.1e-17 | 44 | 121 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 fYn YAk+ GF +r+ +s+ks+r+++i++r + C +++++ + r C+a++ +k maker-scaffold09066-snap-gene-0.12-mRNA-1 44 FYNMYAKREGFLTRVLSSRKSERDRSIISRGLGCRGGSVNRKKDGQ-----------REVCTAMILLK 100 9*********************************877777666555...........999******** PP FAR1 70 kekdgkwevtkleleHnHela 90 +ek+g+w+v k++ +HnH+l+ maker-scaffold09066-snap-gene-0.12-mRNA-1 101 REKSGRWVVRKCVRDHNHALV 121 *******************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-14 | 44 | 121 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MEVDDGNGRL ETSAAGEQCT CDVDTNQEPY VGMDFESEEA ARAFYNMYAK REGFLTRVLS 60 SRKSERDRSI ISRGLGCRGG SVNRKKDGQR EVCTAMILLK REKSGRWVVR KCVRDHNHAL 120 VVQLQKSRRI IDEKDRKIQE LTTELRVKKR LSAAYREQLL KLMKDVEDHN EHLRTKVELV 180 FDNLREFEAK RKEVSDRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023892019.1 | 1e-136 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Swissprot | Q9SZL8 | 9e-17 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2I4ET53 | 1e-103 | A0A2I4ET53_JUGRE; protein FAR1-RELATED SEQUENCE 12-like isoform X2 | ||||
STRING | VIT_05s0102g00470.t01 | 2e-88 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-52 | FAR1 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|