PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold08668-snap-gene-0.14-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 424aa MW: 47994.6 Da PI: 7.8294 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.2 | 2e-26 | 72 | 180 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tek 50 +fY+eYAk+vGF v++++s++s+ +g++++++f C+++g+++e+k + +++ maker-scaffold08668-snap-gene-0.14-mRNA-1 72 SFYREYAKSVGFAVVIKASRRSRISGKFIDAKFACTRYGSKRERKADetmepdsniestmnipvkRRR 139 5*******************************************9999**************887777 PP FAR1 51 errtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 r + + ++t+Cka+++vk ++dg w ++++ +eHnHe++p maker-scaffold08668-snap-gene-0.14-mRNA-1 140 GRINLSWSKTDCKACMHVKTRQDGLWIISSFIKEHNHEIFP 180 7779999*******************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-24 | 72 | 180 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MVHGGDEVHD RDRLIIKSPN VANKENTGPN VNSRILDSRN KENAGEDINL NSFKSLEPHD 60 GMEFESKEEA FSFYREYAKS VGFAVVIKAS RRSRISGKFI DAKFACTRYG SKRERKADET 120 MEPDSNIEST MNIPVKRRRG RINLSWSKTD CKACMHVKTR QDGLWIISSF IKEHNHEIFP 180 DQAYYFRGHR NLDLGSSNVD ALHAIRARTK KMFATMSRQS GGYKKLATLY THAIFKKFQN 240 EVLGVVACHP RKESEDGSTI TFRVQDFEEN QDFIVVWNET TSDIACLCRS LSQETYNIAL 300 NALEEALRKC ESVNNSLQSL IEPSSPSTHA PQGIEEVNQG NSTSNTNRKN SASKKRQVHP 360 EPEVISIGTH DSWPQMGHAN LRAPALDCSY ESQERMQGME QLNSRAAALD GYFSTQQLVQ 420 GMEQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM470929 | 7e-54 | AM470929.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X242953.8, clone ENTAV 115. | |||
GenBank | FQ380691 | 7e-54 | FQ380691.1 Vitis vinifera clone SS0ACG39YP03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023892152.1 | 1e-152 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Refseq | XP_023892153.1 | 1e-152 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Refseq | XP_023892154.1 | 1e-152 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Swissprot | Q9SWG3 | 2e-45 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A2N9ITN8 | 1e-135 | A0A2N9ITN8_FAGSY; Uncharacterized protein | ||||
STRING | VIT_01s0011g01470.t01 | 1e-111 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 6e-48 | FAR1 family protein |