PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold05977-snap-gene-0.21-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 220aa MW: 24981 Da PI: 6.3092 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.2 | 1.5e-09 | 56 | 91 | 54 | 90 |
FAR1 54 traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++ trtgC+a+++ + +g+w v++++ eHnHe+a maker-scaffold05977-snap-gene-0.21-mRNA-1 56 NKLDTRTGCQARIRFDIK-NGNWSVSHFNDEHNHEFA 91 6789************99.****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.7E-7 | 56 | 91 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDFSENALDT AGDNEKSENH ENVSSEEEAY NLYNEYALNK GFGIRKGVTQ KIDHFNKLDT 60 RTGCQARIRF DIKNGNWSVS HFNDEHNHEF ASPEERCNFR LGRKVLSTHG TIIETMVSSG 120 IKATKSYLFL SKELGGVNNV GVFHQIMKTS MTLIQVAEFY EEKVVEMCKN EINEDFRCKN 180 GVPSKIMRYG GILNHAAKVY TITLFKMFEE EFNSSGGSSC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023925132.1 | 8e-54 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2N9F5N9 | 2e-39 | A0A2N9F5N9_FAGSY; Uncharacterized protein | ||||
STRING | XP_004305835.1 | 8e-30 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 8e-11 | FAR1-related sequence 5 |