PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold16569-snap-gene-0.4-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 367aa MW: 42146.2 Da PI: 8.6457

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold16569-snap-gene-0.4-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.2	1.1e-17	69	155	2	87
FAR1 2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 Y++YA vGFs+r++k +k +++g + +r f+Cs+eg r +ek++ ++ + +++etr++C ak+k+ maker-scaffold16569-snap-gene-0.4-mRNA-1 69 IYDSYACVVGFSIRRNKGHKGDKDGsrKWLDRFFCCSCEGIRGNEKRD-DNVKCHHPETRCDCLAKMKI 136 7*************99998666511578899********999.99999*********** PP FAR1 69 kkekdgkwevtkleleHnH 87 + ++++k++v k+++eH+ maker-scaffold16569-snap-gene-0.4-mRNA-1 137 SYRYSKKYCVVKFVSEHTQ 155 ***************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.7E-13	69	154	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MSDSNYHTKT DSQLVRKLNF EDEDSPLVIV EQPKSISIDS NDKIHANEKE EMIPKLGIEF 60 ETEQDVYDIY DSYACVVGFS IRRNKGHKGD KDGSRKWLDR FFCCSCEGIR GNEKRDDNVK 120 CHHPETRCDC LAKMKISYRY SKKYCVVKFV SEHTQILKHA SSVYTPAVFK LFNRELWLTW 180 DCELRKDGEV GSVVKYKVIS PCKSCQHIVQ FDSLAFIVMC SCNKFEFVRI MCPCLKSVRA 240 STADVWTKDA KDGSAMNNYM HVGPHDQNAD VGSRYKVLLK LYSNLAARAA LTDESFRISL 300 DAHERIRLKG RQACVGTSHR RKGALEKATR KRKCQTKASF HIQQLIPEDS MANLNTRGFT 360 DMLNLMQ

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MSDSNYHTKT DSQLVRKLNF EDEDSPLVIV EQPKSISIDS NDKIHANEKE EMIPKLGIEF  60
ETEQDVYDIY DSYACVVGFS IRRNKGHKGD KDGSRKWLDR FFCCSCEGIR GNEKRDDNVK  120
CHHPETRCDC LAKMKISYRY SKKYCVVKFV SEHTQILKHA SSVYTPAVFK LFNRELWLTW  180
DCELRKDGEV GSVVKYKVIS PCKSCQHIVQ FDSLAFIVMC SCNKFEFVRI MCPCLKSVRA  240
STADVWTKDA KDGSAMNNYM HVGPHDQNAD VGSRYKVLLK LYSNLAARAA LTDESFRISL  300
DAHERIRLKG RQACVGTSHR RKGALEKATR KRKCQTKASF HIQQLIPEDS MANLNTRGFT  360
DMLNLMQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023894430.1	1e-103	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3Q0HPZ5	3e-54	A0A3Q0HPZ5_PHODC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_008776542.1	2e-53	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-13	FAR1 family protein