PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00506-snap-gene-0.29-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 174aa    MW: 20373 Da    PI: 7.0439
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00506-snap-gene-0.29-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.12.2e-2140122288
                                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 
                                                 YneYA ++GFsv+k+k ++   ++ + +r++vCskeg+++++++  ++++ ++ +t t+C+a+++ +
  maker-scaffold00506-snap-gene-0.29-mRNA-1  40 LYNEYAIRIGFSVQKEKLRYA--KNVVRQRDYVCSKEGFPQDSDNL-DDKKFKKLQTGTSCEASIRFT 104
                                                7****************9998..6679***************9998.99999**************** PP

                                       FAR1  70 kekdgkwevtkleleHnHe 88 
                                                 + +g+w++t+l+  HnHe
  maker-scaffold00506-snap-gene-0.29-mRNA-1 105 VT-NGEWKITHLNPTHNHE 122
                                                *9.***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-1940122IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MLTMQLTMTD QDIRVNEEGV EDIETLLGMV VHSEAEAYKL YNEYAIRIGF SVQKEKLRYA  60
KNVVRQRDYV CSKEGFPQDS DNLDDKKFKK LQTGTSCEAS IRFTVTNGEW KITHLNPTHN  120
HEPTKPEERP FLRDYNLVGN KWLNTLYENR DKWCSVFSHN IFSTRMKASE GVRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874110.14e-75protein FAR1-RELATED SEQUENCE 5-like, partial
RefseqXP_023880098.19e-80protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2N9J9382e-52A0A2N9J938_FAGSY; Uncharacterized protein
STRINGXP_006485311.14e-34(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.12e-12FAR1-related sequence 12