PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold06380-augustus-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 642aa    MW: 71497.1 Da    PI: 7.1134
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold06380-augustus-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.21.1e-17104178290
                                          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkakl 66 
                                                    Y+eYA+++GFs ++ + ++sk +g+i++r+fvC +eg ++++ ++              C+a l
  maker-scaffold06380-augustus-gene-0.8-mRNA-1 104 LYDEYARRLGFSSKVGQCSRSKSDGTIISREFVCGREGLKRRHADS--------------CDAVL 154
                                                   6**************************************9998777..............***** PP

                                          FAR1  67 kvkkekdgkwevtkleleHnHela 90 
                                                   +++++ ++kw+vtk+++eH+H+l+
  maker-scaffold06380-augustus-gene-0.8-mRNA-1 155 RIELKGQEKWVVTKFVKEHSHSLV 178
                                                   **********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-14104178IPR004330FAR1 DNA binding domain
PROSITE profilePS5096611.115314350IPR007527Zinc finger, SWIM-type
PfamPF044344.3E-10321348IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8325352IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MSSAIYATRT PFLSLFLRLS PTLLSPGAAS QTLIKPLYKT LSFFTFSSDV EEGMGHRGVA  60
NDGDAELNEG ELNIAENSAA HDEDGFAEPY VGMEFDSEDV AKTLYDEYAR RLGFSSKVGQ  120
CSRSKSDGTI ISREFVCGRE GLKRRHADSC DAVLRIELKG QEKWVVTKFV KEHSHSLVSP  180
SKVHYLRPRR HFAGSAKTMA ETYQGVGIVP SGVMYVSMDG NHVPVEANRG YERALDSWFE  240
KEIESDFDTI CTMPVLRTPS PMEKQAANLY TRKIFAKFQE ELVETFVYTA NRIEGDGAIS  300
TFRVAKFEDD QKAYIVTLNY PDMRANCSCQ MFEYSGILCR HVLTVFTVTN VLTLPPHYIL  360
KRWTRNSKIG AGSDERGGEL HGQESLTLRY NNLCREAIKY AEDGAIAVET YNAAMGALKE  420
GGKKVAVLKK NVAKVAPPSS QVSGISYDDK KNSTSAADMT PLLWPRQDEM TRRFNLNDTG  480
PPAQSVADLN LPRMAPVSLH RDDGPTENTV VLPCLKSMTW VMENKNSPPG NRVAVINLKL  540
QDYSRNPSAE SEVKFQLSRV SLEPMLRSMA YISEQLSTPA NKVAVINLKL QDTETTSGES  600
EVKFQVSRDT LGAMLRSMAY IREQLSIAAE TQPEPLPKKQ RK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921618.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_023921619.10.0protein FAR1-RELATED SEQUENCE 3
RefseqXP_023921620.10.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A1R3HB080.0A0A1R3HB08_COCAP; Uncharacterized protein
STRINGXP_008373411.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]