PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00403-snap-gene-0.30-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 153aa MW: 18635.5 Da PI: 7.4059 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 24.7 | 7.4e-08 | 35 | 90 | 2 | 62 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgC 62 fY++YA++ Fs+rk + ++ n+ei++r+f C +e ++++ + ++ + + ++ C maker-scaffold00403-snap-gene-0.30-mRNA-1 35 FYRTYASQHAFSIRKGRFVTK--NKEIVRRDFFCHREEEEDRIQLL---KEANLSIRQIMC 90 9***************98777..999**********9887765544...444444444554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-5 | 35 | 76 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MKKNSDICGE KVLEEYNFEP FVGQCFLSEE ETFIFYRTYA SQHAFSIRKG RFVTKNKEIV 60 RRDFFCHREE EEDRIQLLKE ANLSIRQIMC IMELEKKVEH GHLPFFQKDI RFCIIDEKDT 120 QVYFDWSRSM DHRGNFKRIV IHKTCLLYMT CYC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2U1PNT9 | 5e-27 | A0A2U1PNT9_ARTAN; Protein FAR1-RELATED SEQUENCE 11 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15165 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 2e-10 | FAR1-related sequence 10 |