PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01639-snap-gene-0.21-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 262aa    MW: 29335.3 Da    PI: 6.7855
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01639-snap-gene-0.21-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1812.1e-2594183290
                                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkv 68 
                                                fY++Y+ +vGF +r+++ ++sk +g+++ rt vC+keg+r+  + + ++k+ ++r+ tr+gCka+l v
  maker-scaffold01639-snap-gene-0.21-mRNA-1  94 FYSAYSMRVGFITRINYLSRSKLDGSVIGRTIVCNKEGYRKAYRCDiNKKNIKPRTPTRVGCKAMLSV 161
                                                9****************************************999987788899*************** PP

                                       FAR1  69 kkekdgkwevtkleleHnHela 90 
                                                +k ++gkw+vtk+++eH+H+l+
  maker-scaffold01639-snap-gene-0.21-mRNA-1 162 RKLSTGKWVVTKFVKEHTHALT 183
                                                *******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-2394183IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
IIWAEPVRPI INPKALDPEL AVDIQNGVGE NSTEIELELG NDGAMIGSSF EEVSCLGQND  60
EMTHESSREG GTVVEGDGPY VGQEFESEEA AHAFYSAYSM RVGFITRINY LSRSKLDGSV  120
IGRTIVCNKE GYRKAYRCDI NKKNIKPRTP TRVGCKAMLS VRKLSTGKWV VTKFVKEHTH  180
ALTAVNSQNC SIINQIPNEN VKIQELTRQL LLERERSASL RKTIDLLFNH IEEHTQDLSK  240
TVQYIADKVK EIESVGKKPQ NL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872289.11e-134protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2I4FBJ81e-121A0A2I4FBJ8_JUGRE; protein FAR1-RELATED SEQUENCE 12-like
STRINGEOY097241e-106(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-59FAR1 family protein