PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01299-snap-gene-0.24-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 613aa MW: 70197.1 Da PI: 8.478

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01299-snap-gene-0.24-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	2e-21	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ + ++++k +r+r+++r+gC+a ++ maker-scaffold01299-snap-gene-0.24-mRNA-1 62 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPIKASNESKPQRNRKSSRCGCQAYMR 129 6************9998877356667999*************999************* PP FAR1 68 vkkek...dgkwevtkleleHnHela 90 ++k++ ++w++t + ++HnHel maker-scaffold01299-snap-gene-0.24-mRNA-1 130 ISKTTelgASEWRITGFLNHHNHELL 155 9988899*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-18	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.2E-8	244	295	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.421	480	516	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.2E-8	486	514	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.8E-5	491	518	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MSEEAGPLLV VYDDPSDQRS SSLDNTSSTE ESPDETRLSL ETTNDAVPSM GQRFATHDAA 60 YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKASNE SKPQRNRKSS 120 RCGCQAYMRI SKTTELGASE WRITGFLNHH NHELLEPNQV RFLPAYRTIS DTDKSRILMF 180 AKTGISVHQM MKLMELEKCV EPGFLPFTEK DVRNLLQSFR KLDPEEESID LLRMCRNIKE 240 RDPNFKSFSW ALKAFLGFMN GKAPQTILTD QNMCLKEAVA IELPMTKHAL CIWMIVGKFP 300 SWFNAVLGER YNEWKTEFFR IYNLESIEDF ELGWMEMVNS FGLHANRHIA NLYGLRSLWA 360 LPFLRTHFFA GMTTNGQSKS INAFIQRFLS AQTRLAHFVE QAAVAVDFRD QAGEQQTMQQ 420 NLQNICLKTG APMESHAATI LTPFAFSKLQ EQLVLAAHYA SFQMDDGFLV RHHTKAEGGR 480 KVYWALREGI ISCSCHHFEF SGILCRHALR VFSTGNCFQI PDRYLPIRWR RISTPSAKLF 540 QSSPSDHAER IQILQSMVST LVTESAKSKE RLDIANEQIA ILLSRIKEQP VSLQGMRDVS 600 SVHEVFDSRI YQK

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MSEEAGPLLV VYDDPSDQRS SSLDNTSSTE ESPDETRLSL ETTNDAVPSM GQRFATHDAA  60
YEFYSEFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPIKASNE SKPQRNRKSS  120
RCGCQAYMRI SKTTELGASE WRITGFLNHH NHELLEPNQV RFLPAYRTIS DTDKSRILMF  180
AKTGISVHQM MKLMELEKCV EPGFLPFTEK DVRNLLQSFR KLDPEEESID LLRMCRNIKE  240
RDPNFKSFSW ALKAFLGFMN GKAPQTILTD QNMCLKEAVA IELPMTKHAL CIWMIVGKFP  300
SWFNAVLGER YNEWKTEFFR IYNLESIEDF ELGWMEMVNS FGLHANRHIA NLYGLRSLWA  360
LPFLRTHFFA GMTTNGQSKS INAFIQRFLS AQTRLAHFVE QAAVAVDFRD QAGEQQTMQQ  420
NLQNICLKTG APMESHAATI LTPFAFSKLQ EQLVLAAHYA SFQMDDGFLV RHHTKAEGGR  480
KVYWALREGI ISCSCHHFEF SGILCRHALR VFSTGNCFQI PDRYLPIRWR RISTPSAKLF  540
QSSPSDHAER IQILQSMVST LVTESAKSKE RLDIANEQIA ILLSRIKEQP VSLQGMRDVS  600
SVHEVFDSRI YQK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027363108.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A061GZJ8	0.0	A0A061GZJ8_THECC; FAR1-related sequence 11
STRING	EOY33159	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]