PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold12279-snap-gene-0.4-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 551aa MW: 63477.7 Da PI: 7.845 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.4 | 8.8e-27 | 54 | 139 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk+ maker-scaffold12279-snap-gene-0.4-mRNA-1 54 FYKEYAKSVGFGTAKLSSRRSRASREFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKR 118 ****************************************999877....9****************** PP FAR1 71 ekdgkwevtkleleHnHelap 91 + +gkw+++++++eHnHel p maker-scaffold12279-snap-gene-0.4-mRNA-1 119 RPNGKWYIYSFVKEHNHELLP 139 ******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-24 | 54 | 139 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.658 | 339 | 375 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.1E-9 | 345 | 373 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.4E-8 | 350 | 377 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MEIYTLPMGG DSLKCKVDLN IPTTIMDSNV IMDNAIIEPR DDMEFDSHED AYTFYKEYAK 60 SVGFGTAKLS SRRSRASREF IDAKFSCIRY GNKQQSDDAI NPRPSPKIGC KASMHVKRRP 120 NGKWYIYSFV KEHNHELLPA QAHFFRSHRN ADPLKNDVRV RRRKNLTAVS KLFSAYQNSW 180 TEEQFERRWW KLINRFNLRE LEWVQSLYED RTHWVPTFMK DLSFAGLSTP LRSESLNSVF 240 DKYIQGETSL IDFMKRYREI LEDRYEEEAK ANFDAWHETP ELKSPSPFEK QMSLVYTHEI 300 FKKFQVEVLG AAACHLKKEN EDETTTIYTV KDFEDNQNYA VEWNESKLDI YCSCRSFEYK 360 GYLCRHAIVV LQMSGVFNIP SKYILQRWTN AAKSRHSIGE RLDEVQSKVR RFNDLCRRAI 420 ILGEEGSLSP ESYNIALCAI KEALKQCAIV NNPVENDTRN MTSTTPAICA VEVNQCGNPS 480 NEIVPDPKVI NGNKAPRRAG AGKEVASNEN SSSNKGKVPQ PEAVNIGIQD GFLQMMHVHT 540 HSCWRSGGND L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023916476.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4-like | ||||
Swissprot | Q6NQJ7 | 1e-151 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A2H5NMJ7 | 0.0 | A0A2H5NMJ7_CITUN; Uncharacterized protein | ||||
STRING | XP_008234547.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 1e-153 | FAR1-related sequence 4 |
Publications ? help Back to Top | |||
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