PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01061-snap-gene-0.34-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 623aa MW: 70172.7 Da PI: 6.4685

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01061-snap-gene-0.34-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.2	2e-16	62	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 fY++YA++vGFs+ + +++k +g i++ +f Cs+e +++++ ++ C+a+++++ maker-scaffold01061-snap-gene-0.34-mRNA-1 62 FYDAYARRVGFSTHVGPFSRNKPDGPIVTWEFACSREIFKRKNIES--------------CNAMIRLE 115 9*************************************998877..............**** PP FAR1 70 kekdgkwevtkleleHnHela 90 +++++ w+vtk++++HnH+++ maker-scaffold01061-snap-gene-0.34-mRNA-1 116 RKDSNSWVVTKFVEDHNHSMV 136 ****************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-13	62	136	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	11.325	349	385	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.3E-12	349	383	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.6E-8	360	387	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence Send to blast
MDVEGDNREN HVHGNSEHDN GEKQNLAGNS TEREVISQDD DDETATPQVG MEFESEDAGK 60 TFYDAYARRV GFSTHVGPFS RNKPDGPIVT WEFACSREIF KRKNIESCNA MIRLERKDSN 120 SWVVTKFVED HNHSMVSPSK VHYLRPRRHF AGATKSVVDT LDATGDVYVS MDGNSVAFQP 180 NHVVRSASPV EPNHPIRSSS WGSLLDKYDL RKNEWLQAVY NARKQWAPVY FRGTFFAALS 240 SNQGVSSFFD GYVNQQTTIP LFFKQYERAL EHSLEKEIEA DYDTICTTPV LKTPSPMEQQ 300 AANLYTRKVF TKFQEELVET FVYTANNIEG DGVVSKYRVA KYEHDHKAYI VNVDVSEMKA 360 NCSCQMFEYS GILCRHILTV FTVTNVLTLP SHYILKRWTR NAKAGVGLDE QNSDPQGIET 420 LTLRFNNLCR EAIKYAEEGS VAIETYNAAM NALREGEKKI ASVKKNVAKV TPLISQGSGD 480 SQDDNNKKTS MSFPEMAPSL WPWQEAMPHR FNLNDVGVPG ADLNQPSMAP VSIHRDGATS 540 DNTVVLTCFK SMTWVIENKN STPAGRVAVI NLKLQDYGKN PSGETEVQFR LTRITLEPML 600 RSMAYISQQL STPTNRVAVI NLK

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence Send to blast

MDVEGDNREN HVHGNSEHDN GEKQNLAGNS TEREVISQDD DDETATPQVG MEFESEDAGK  60
TFYDAYARRV GFSTHVGPFS RNKPDGPIVT WEFACSREIF KRKNIESCNA MIRLERKDSN  120
SWVVTKFVED HNHSMVSPSK VHYLRPRRHF AGATKSVVDT LDATGDVYVS MDGNSVAFQP  180
NHVVRSASPV EPNHPIRSSS WGSLLDKYDL RKNEWLQAVY NARKQWAPVY FRGTFFAALS  240
SNQGVSSFFD GYVNQQTTIP LFFKQYERAL EHSLEKEIEA DYDTICTTPV LKTPSPMEQQ  300
AANLYTRKVF TKFQEELVET FVYTANNIEG DGVVSKYRVA KYEHDHKAYI VNVDVSEMKA  360
NCSCQMFEYS GILCRHILTV FTVTNVLTLP SHYILKRWTR NAKAGVGLDE QNSDPQGIET  420
LTLRFNNLCR EAIKYAEEGS VAIETYNAAM NALREGEKKI ASVKKNVAKV TPLISQGSGD  480
SQDDNNKKTS MSFPEMAPSL WPWQEAMPHR FNLNDVGVPG ADLNQPSMAP VSIHRDGATS  540
DNTVVLTCFK SMTWVIENKN STPAGRVAVI NLKLQDYGKN PSGETEVQFR LTRITLEPML  600
RSMAYISQQL STPTNRVAVI NLK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023900507.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2P5RKE8	0.0	A0A2P5RKE8_GOSBA; Uncharacterized protein
STRING	XP_008231884.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-178	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]