PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold11611-snap-gene-0.9-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 125aa MW: 15121.7 Da PI: 10.1637

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold11611-snap-gene-0.9-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	45.1	3.2e-14	27	90	25	90
FAR1 25 ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++i +r f Cskeg++ +e+ e+++ ++ etr+gCk ++ + e +++w+v+ ++ eHnHel+ maker-scaffold11611-snap-gene-0.9-mRNA-1 27 EQNIGQRGFLCSKEGFKIDEDPY-EEKNWKKLETRIGCKKFIRFTVE-NDVWRVIAFNPEHNHELV 90 4678899**********9999.99999*************9.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-11	27	90	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MVMTICWIRW HILKLKHTIY TIIMHYEQNI GQRGFLCSKE GFKIDEDPYE EKNWKKLETR 60 IGCKKFIRFT VENDVWRVIA FNPEHNHELV LPSERHLLRS NRRISKPKAG LIDSMNWNFK 120 THGIK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023873391.1	3e-45	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_023927282.1	6e-49	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2N9ET88	2e-38	A0A2N9ET88_FAGSY; Uncharacterized protein
STRING	EMJ21227	1e-25	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3607	9	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-15	FAR1-related sequence 5