PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02580-snap-gene-0.30-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 219aa MW: 25962.2 Da PI: 8.6993 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.9 | 5.1e-16 | 41 | 127 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 Yn+YA+++ Fs+rk k ++ + +++i +++f Cskeg++ +e+ e+++ ++ etrtg k + + maker-scaffold02580-snap-gene-0.30-mRNA-1 41 LYNNYASRTCFSIRKGKPRYINGTKNIRQHEFLCSKEGFKIDEDPY-EEKNWKKLETRTGYKVFICFT 107 7*****************************************9999.99999**************** PP FAR1 70 kekdgkwevtkleleHnHela 90 e +++ +vt ++ +HnH+la maker-scaffold02580-snap-gene-0.30-mRNA-1 108 FE-NNVRRVTAFNPKHNHKLA 127 *9.999*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.2E-13 | 41 | 127 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
ICNLSDIGGI EEDCLFIERL ENNDENLLDK VTDSEDEAYN LYNNYASRTC FSIRKGKPRY 60 INGTKNIRQH EFLCSKEGFK IDEDPYEEKN WKKLETRTGY KVFICFTFEN NVRRVTAFNP 120 KHNHKLALPS ERHLLKSGRH ISKPKAELEF QNTWDKMMHK FNLEDHHWLN MMYKIQHKWS 180 TAFTKDSFTT EFKASSRSEN TNHVLNNIAN TTRRPTKSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023873391.1 | 7e-73 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2N9ET88 | 5e-57 | A0A2N9ET88_FAGSY; Uncharacterized protein | ||||
STRING | XP_008229713.1 | 1e-37 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-11 | FAR1-related sequence 5 |