PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold16046-snap-gene-0.1-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 208aa    MW: 23451.3 Da    PI: 6.9416
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold16046-snap-gene-0.1-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR144.74.6e-14501251090
                                      FAR1  10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwev 78 
                                               +G +vr +++ ++  n    +r+fvCsk+g++e e+ + + ++ ++   rtgC a+++   + ++ w v
  maker-scaffold16046-snap-gene-0.1-mRNA-1  50 IGMQVRSEEEAYNIYN---EQREFVCSKQGFKEFEDPS-NVQKYHNLDVRTGCCARIRFDVK-NDIWSV 113
                                               5666776666666444...49*************9999.88899999*************99.9***** PP

                                      FAR1  79 tkleleHnHela 90 
                                               ++++  HnHe+a
  maker-scaffold16046-snap-gene-0.1-mRNA-1 114 SHFNDTHNHEFA 125
                                               *********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1155124IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAEDQRVAGS KSFVRLVMDF SKNAFVAVGD NDKREKFENV TLGECDEIKI GMQVRSEEEA  60
YNIYNEQREF VCSKQGFKEF EDPSNVQKYH NLDVRTGCCA RIRFDVKNDI WSVSHFNDTH  120
NHEFAIPEER CNLRSGRKVL PTHGNIISTM VSSGIKATKS YSFLSKELGG ANNNGAPGKV  180
HKHGGILSHA AKVYTLALFG MFEEEFNS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023925132.12e-94protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2N9F5N94e-54A0A2N9F5N9_FAGSY; Uncharacterized protein
STRINGXP_008338042.12e-34(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-11FAR1-related sequence 5