PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold06042-snap-gene-0.11-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 205aa MW: 23844.7 Da PI: 7.1653 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.5 | 6.9e-21 | 31 | 116 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 ++YneYA + GFs+rk ++k + +r+f Csk+g++e e+ + ++ ++ trtgC+a+++ maker-scaffold06042-snap-gene-0.11-mRNA-1 31 NMYNEYALNKGFSIRKGVTRKI--DVVLRQREFLCSKQGHKEFEDPC-DYKKFNKLDTRTGCQARIRF 95 58***************98887..9999**************99988.89999*************** PP FAR1 69 kkekdgkwevtkleleHnHela 90 + +g w v++++ eHnHe+a maker-scaffold06042-snap-gene-0.11-mRNA-1 96 DIK-NGIWSVSHFNDEHNHEFA 116 *99.****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.3E-18 | 32 | 116 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MDFLENALDT AGDNEKSENH ENVSSEEEAY NMYNEYALNK GFSIRKGVTR KIDVVLRQRE 60 FLCSKQGHKE FEDPCDYKKF NKLDTRTGCQ ARIRFDIKNG IWSVSHFNDE HNHEFASPEE 120 RCNLRSGRKV LSTHGTIIET TVSSGIKATK LYQIREKWCP AFNVDFFSAK MKSTQRSEST 180 NSVFHQIMKT SMTLIQVVEF YEEKV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023925132.1 | 9e-66 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2N9F5N9 | 6e-59 | A0A2N9F5N9_FAGSY; Uncharacterized protein | ||||
STRING | XP_008338042.1 | 6e-37 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-10 | FAR1-related sequence 5 |