PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold08966-snap-gene-0.12-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 261aa MW: 29996.9 Da PI: 5.5741 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26.5 | 2.1e-08 | 32 | 72 | 49 | 90 |
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++e+ ++ +t tgC+a++ + + +g+w+v++++ HnHela maker-scaffold08966-snap-gene-0.12-mRNA-1 32 DDEQFKKLQTMTGCEASILFTVT-NGEWKVIHFNPTHNHELA 72 677889999************99.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-6 | 29 | 72 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MDIRVNEEGV EDIETLLGMV VHRFPRDSDN LDDEQFKKLQ TMTGCEASIL FTVTNGEWKV 60 IHFNPTHNHE LAKPEEMSFL RLKQKIIDAQ LEFESSWDAL LRDYNLVGNK WLNTSYENRE 120 RWCSVFSHNI FSARIKASAR SESVNNVFQH MACKTMRLTK FVEELEEDFH CKQGTSSQIV 180 KNCGLLEHAL SVYTPTFFKR FELGIASTLG VTHQDVYSDG VSFTYEVIEG GGRRAHVVQF 240 NSSNNVVTCS CKMFETLELL C |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023874110.1 | 1e-100 | protein FAR1-RELATED SEQUENCE 5-like, partial | ||||
TrEMBL | A0A251NIG2 | 1e-50 | A0A251NIG2_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A251QFY5 | 1e-50 | A0A251QFY5_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5WL03 | 6e-51 | M5WL03_PRUPE; Uncharacterized protein (Fragment) | ||||
TrEMBL | M5X477 | 7e-51 | M5X477_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09943 | 1e-51 | (Prunus persica) | ||||
STRING | EMJ20729 | 1e-51 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-19 | FAR1-related sequence 5 |