PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00285-augustus-gene-0.37-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 260aa MW: 29457.6 Da PI: 5.9988

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00285-augustus-gene-0.37-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	102.3	4.7e-32	84	171	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkak 65 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r+e ++ +++r+r+ tr+gCka+ maker-scaffold00285-augustus-gene-0.37-mRNA-1 84 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRREGGEN--RSKRQRTITRVGCKAQ 145 9***************************************9998..999********* PP FAR1 66 lkvkkekdgkwevtkleleHnHelap 91 ++vkk+++g+w v+kl++eHnHel+p maker-scaffold00285-augustus-gene-0.37-mRNA-1 146 MTVKKQSSGRWAVSKLVKEHNHELVP 171 **********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-29	84	171	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MDFEPLNIEN EVMEFDASGS MEDDTATLDV ENHDDDYERD YNDESFEGSN PSTSNVFLTH 60 NGEEPNLEPY EGMEFDSEQA ARIFYNSYAR RIGFSTRVSV YQRSRRDGSI ICRQIVCSRE 120 GFRREGGENR SKRQRTITRV GCKAQMTVKK QSSGRWAVSK LVKEHNHELV PPDKAAKKVA 180 AAKKHGSGVH QSALDNGSPQ LQSYSLDQDK EIQALTAELE NASQQCEAYR AKLSAVLKNL 240 EEQKLKISVK VQNVRLNLRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023918432.1	1e-122	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2N9IUY1	1e-108	A0A2N9IUY1_FAGSY; Uncharacterized protein
STRING	VIT_18s0122g00530.t01	1e-84	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	8e-38	FAR1 family protein