PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold04145-snap-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 192aa    MW: 21962.7 Da    PI: 4.736
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold04145-snap-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1318.5e-10611103990
                                      FAR1  39 gkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                                               g+++++++  ++++ ++ +trtgC+ +++ + + +g+w+vt+++  HnHela
  maker-scaffold04145-snap-gene-0.9-mRNA-1  61 GFPRDSDNL-DDKKFKKLQTRTGCEVSIRFTVT-NGEWKVTHFNPTHNHELA 110
                                               566666655.7889999***************9.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-764110IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MIEVVAGIQC SPSQLTMADQ DITVNEEGVE DTETLLGMVV HSKDEAYKLY NDYAIRIGFK  60
GFPRDSDNLD DKKFKKLQTR TGCEVSIRFT VTNGEWKVTH FNPTHNHELA KPEEMPFLRS  120
NRKITDAQLE LEEDFRCKQG TSSQIVQNCG LLEHALSIYT CTFFKRFELE IASTLGVTHQ  180
DVYFDGVSFT YE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874110.12e-73protein FAR1-RELATED SEQUENCE 5-like, partial
RefseqXP_023880098.17e-77protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2N9J9382e-40A0A2N9J938_FAGSY; Uncharacterized protein
STRINGXP_008229713.12e-27(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.14e-10FAR1-related sequence 11