PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold15409-snap-gene-0.2-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | FAR1 | ||||||||
Protein Properties | Length: 123aa MW: 14400.2 Da PI: 8.703 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.1 | 1.9e-20 | 11 | 96 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 kf n+YA ++GF v k+k ++ ++ + +r++vCskeg++++ ++ ++++ +r +trtgC+a+++ +++ maker-scaffold15409-snap-gene-0.2-mRNA-1 11 KFNNDYAIQIGFIVIKEKLRYA--KNDVRQREYVCSKEGFPQDGDHL-DDKKFKRLQTRTGCEASIQFTMT 78 5889**************9999..4447***************9988.9999*****************99 PP FAR1 72 kdgkwevtkleleHnHela 90 +g+w+vt+++ + nHel+ maker-scaffold15409-snap-gene-0.2-mRNA-1 79 -NGEWKVTHFNPNRNHELV 96 .****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.4E-18 | 12 | 96 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MVVHSEEEAY KFNNDYAIQI GFIVIKEKLR YAKNDVRQRE YVCSKEGFPQ DGDHLDDKKF 60 KRLQTRTGCE ASIQFTMTNG EWKVTHFNPN RNHELVKPEE RPFLRSNRKL TDAQLGLHLG 120 AST |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023880098.1 | 5e-66 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A2N9J938 | 2e-45 | A0A2N9J938_FAGSY; Uncharacterized protein | ||||
STRING | XP_004305835.1 | 8e-35 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-16 | FAR1-related sequence 5 |