PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold16277-snap-gene-0.2-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

FAR1

Protein Properties

Length: 410aa MW: 47800.9 Da PI: 9.1331

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold16277-snap-gene-0.2-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71	2.8e-22	39	125	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkk 70 Yn+YA ++GFs+rk k k+ + +++i +r+f Cskeg++ +e+ ek++ ++ etrtgCka ++ + maker-scaffold16277-snap-gene-0.2-mRNA-1 39 LYNNYALQTGFSIRKGKPKYFNGTKNIRQREFLCSKEGFKIDEDPC-EKKNWKKLETRTGCKAFIRFTV 106 7*************************************999988.89999************* PP FAR1 71 ekdgkwevtkleleHnHela 90 e +++w+vt ++le nHela maker-scaffold16277-snap-gene-0.2-mRNA-1 107 E-NDVWKVTAFNLEYNHELA 125 9.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.6E-20	39	125	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.013	297	335	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.1E-6	309	332	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.9E-5	310	337	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
CNSSDIEGIE DCLFVERLEN SDDNLLDKVA YTENEAYNLY NNYALQTGFS IRKGKPKYFN 60 GTKNIRQREF LCSKEGFKID EDPCEKKNWK KLETRTGCKA FIRFTVENDV WKVTAFNLEY 120 NHELALPSER HLLRSRRRIS KPKAGLIDSM VNAELEFQNT WDKMMHKFNL KDHHWLNMMY 180 KIRHKWNTAF TKDSFIAEFK ASSRSESTNH VLNNIANTTI SLTNFIIKYK SVLAGMRAPQ 240 RAVKKSGILG HAAQVYTCKI FKLFEYEFVN SLAIEWKQVD CQNTIDVFEV KEEDSQRVCI 300 VHFDNFNSNI SCSCKKYESL GILCCHALRV FNLKILTKIS SQCILKRWTK EAKKGMMVYE 360 QDNHSSSNAK EVEIVWRNSM LRIANTIISK SQRDDSLKSI CQKILLVCNK

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

CNSSDIEGIE DCLFVERLEN SDDNLLDKVA YTENEAYNLY NNYALQTGFS IRKGKPKYFN  60
GTKNIRQREF LCSKEGFKID EDPCEKKNWK KLETRTGCKA FIRFTVENDV WKVTAFNLEY  120
NHELALPSER HLLRSRRRIS KPKAGLIDSM VNAELEFQNT WDKMMHKFNL KDHHWLNMMY  180
KIRHKWNTAF TKDSFIAEFK ASSRSESTNH VLNNIANTTI SLTNFIIKYK SVLAGMRAPQ  240
RAVKKSGILG HAAQVYTCKI FKLFEYEFVN SLAIEWKQVD CQNTIDVFEV KEEDSQRVCI  300
VHFDNFNSNI SCSCKKYESL GILCCHALRV FNLKILTKIS SQCILKRWTK EAKKGMMVYE  360
QDNHSSSNAK EVEIVWRNSM LRIANTIISK SQRDDSLKSI CQKILLVCNK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023873391.1	1e-158	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_023929269.1	1e-158	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2N9ET88	1e-126	A0A2N9ET88_FAGSY; Uncharacterized protein
TrEMBL	A0A2N9FSL8	1e-131	A0A2N9FSL8_FAGSY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3607	9	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-30	FAR1-related sequence 5