PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00580-snap-gene-0.34-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 262aa    MW: 29578.8 Da    PI: 9.8122
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00580-snap-gene-0.34-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.82.1e-141889272
                                       FAR1  2 fYneYAkevGFsvrkskskkskrng..eitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69
                                                Y++YA+ vGFs+r++k +k +++g  +  +r f+Cs+eg r ++k++ ++ + +++etr+gC a++k++
  maker-scaffold00580-snap-gene-0.34-mRNA-1 18 IYDSYARVVGFSIRRNKGHKGNKDGsrKWLDRVFCCSCEGIRGNDKRD-DNVKCHHPETRCGCLAEMKIS 86
                                               7***************9999866651167899*************999.99999***************9 PP

                                       FAR1 70 kek 72
                                                ++
  maker-scaffold00580-snap-gene-0.34-mRNA-1 87 CKY 89
                                               775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-101888IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MILKLGIEFK TEQDVYDIYD SYARVVGFSI RRNKGHKGNK DGSRKWLDRV FCCSCEGIRG  60
NDKRDDNVKC HHPETRCGCL AEMKISCKYK ILKHATSVYT PAVFKLFNRE LWLTWDCELH  120
KDGKVGSVIK WTKDANDGSA MNNYMYVGPH DQNADVGSRY KVLLKLYSNL AARAALTDES  180
FCISLDAHEK SAVGGAYFKS KAQQANDNVQ PTNYEGNKIK GIRLKGRQAC VGTSHRGKGA  240
LEKATRKRKC QTKTSSHIQQ LI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894430.11e-64protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026656773.14e-66protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A3Q0HPZ51e-64A0A3Q0HPZ5_PHODC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_008776542.12e-64(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-08FAR1 family protein