PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01488-snap-gene-0.43-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 399aa    MW: 46811.5 Da    PI: 7.5774
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01488-snap-gene-0.43-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.62.2e-09641035090
                                       FAR1  50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                                                 ++ +r +trt+C+a+++ +++ +g+w+vt+++ +HnH+l+
  maker-scaffold01488-snap-gene-0.43-mRNA-1  64 MRKFKRLQTRTDCEASIQFTMT-NGEWKVTHFNPNHNHKLT 103
                                                5667899*************99.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-738103IPR004330FAR1 DNA binding domain
SMARTSM005754.2E-4291318IPR006564Zinc finger, PMZ-type
PfamPF044346.9E-4294315IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MCFVMFLIIN IRADEELQDV ENLFGMVVHN EEKAYKLYND YAIQIGFSVR KEKLKYAKKW  60
CKTMRKFKRL QTRTDCEASI QFTMTNGEWK VTHFNPNHNH KLTKLEERLT FKEAGIRTVS  120
TYSYLAEEAG GLKIDYNLVG YKWLNTLYEN RERWCLVFSH NIFSYRMKIS SRSESTNNVF  180
QHMACKTMRL TEFVHEYEKA SKNIHMEELE EDFHCKQGTS FQIVHNFGLL QHASFVYTHK  240
IFKRFELEII STLEVTHQGI NYDGVSFTYE VIEGGGWRVQ VVHFNSSNNV VTNSCKMFEA  300
LGLLCRHALR ILIVKNKDSV VCDHAKSADL NDELSMTSHC NKLMRSVYEI FTKSAATTRY  360
TEMCKRKTTE MIELIEKDME VLSVARDDGE RENSFVDNN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874110.11e-134protein FAR1-RELATED SEQUENCE 5-like, partial
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-21FAR1-related sequence 5