PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Phylogenetic Tree for OGEM492
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Subtree rooted at node 196: /----- Cagra.0747s0001.1.p [Capsella grandiflora] (3) /------100-----+ | \----- Carubv10024768m [Capsella rubella] (114) | | /----- Csa16g044510.1 [Camelina sativa] (94) /-100+ /-67-+ | | | \----- Csa07g052850.1 [Camelina sativa] (130) | | /-100+ | | | \---------- Csa09g087050.1 [Camelina sativa] (137) | \-100+ /------100------+ \--------------- Bostr.19427s0043.1.p [Boechera stricta] (150) | | | | /---------- AT2G22760.1 [Arabidopsis thaliana] (50) | | | | \------100-----+ /----- 481137 [Arabidopsis lyrata] (116) | \-100+ | \----- Araha.25108s0001.1.p [Arabidopsis halleri] (125) | | /----- XP_009140387.1 [Brassica rapa] (12) | /---100---+ | | \----- GSBRNA2T00032912001 [Brassica napus] (41) | | | /---100---+ /----- XP_013634830.1 [Brassica oleracea] (15) | | | /-100+ | | | | \----- GSBRNA2T00149793001 [Brassica napus] (99) | | \-69-+ /-99-+ | | /----- RrC28165_p1 [Raphanus raphanistrum] (46) | | | \-100+ | | | \----- Rsa1.0_00126.1_g00012.1 [Raphanus sativus] (83) | | | | | /-78-+ /----- RrC11742_p1 [Raphanus raphanistrum] (40) | | | | /---100---+ | | | | | \----- Rsa1.0_24580.1_g00001.1 [Raphanus sativus] (59) | | | | | | | | | /-100+ /----- XP_009117332.1 [Brassica rapa] (87) | | | | | | /-100+ | | | | | | | \----- GSBRNA2T00078166001 [Brassica napus] (98) | | /-100-+ | | \-100+ /-99-+ | | | \-97-+ | /----- GSBRNA2T00007368001 [Brassica napus] (133) | | | | | | \-100+ | | | | | | \----- XP_013603284.1 [Brassica oleracea] (146) | | | | | | | | \-100+ | \-------------------- 676720272 [Sisymbrium irio] (52) | | | | | | | \------------------------------ Tp4g01750 [Thellungiella parvula] (28) /-70-+ | | | | | \------------------------------------ Thhalv10000494m [Eutrema salsugineum] (90) | | | | | | /----- AA12G00203 [Aethionema arabicum] (66) | | \-------------------100------------------+ /-93-+ | \----- AA46G00163 [Aethionema arabicum] (86) | | | | | \--------------------------------------------------- XP_010555452.1 [Tarenaya hassleriana] (23) | | | \-------------------------------------------------------- XP_010531586.1 [Tarenaya hassleriana] (141) | | /----- Gh_A12G0736 [Gossypium hirsutum] (9) | /-100+ | | \----- Cotton_A_37582_BGI-A2_v1.0 [Gossypium arboreum] (43) | /---100---+ | | \---------- Gorai.008G087600.1 [Gossypium raimondii] (128) | | | | /----- Cotton_A_10840_BGI-A2_v1.0 [Gossypium arboreum] (19) | /-63-+ /-99-+ | | | | \----- Gh_A11G0459 [Gossypium hirsutum] (144) | | | /-80-+ | | | | \---------- Gh_D11G0530 [Gossypium hirsutum] (117) | | \-100+ --66-+ | \--------------- Gorai.007G057800.1 [Gossypium raimondii] (58) | | | /-53-+ /----- Gh_D11G2074 [Gossypium hirsutum] (13) | | | /-95-+ | | | | \----- Gorai.007G229000.1 [Gossypium raimondii] (110) | | | /-100+ | | | | | /----- Gh_A11G1894 [Gossypium hirsutum] (44) | | | | \-97-+ | | \----75---+ \----- Cotton_A_35670_BGI-A2_v1.0 [Gossypium arboreum] (56) | /-100-+ | | | | \--------------- Thecc1EG000894t1 [Theobroma cacao] (110) | | | | | | /----- Gh_A02G1415 [Gossypium hirsutum] (24) | | | /-98-+ | | | | \----- Cotton_A_29913_BGI-A2_v1.0 [Gossypium arboreum] (160) | | \--------100--------+ | | | /----- Gorai.003G034600.1 [Gossypium raimondii] (25) \-----------74-----------+ \-100+ | \----- Gh_D03G0304 [Gossypium hirsutum] (131) | | /----- Neem_36020_f_1 [Azadirachta indica] (17) | /---100---+ | | \----- Neem_10696_f_1 [Azadirachta indica] (140) | | \---------95---------+ /---------- Neem_1256_f_1 [Azadirachta indica] (111) | | \-56-+ /----- Ciclev10027504m [Citrus clementina] (118) \-100+ \----- orange1.1g026436m [Citrus sinensis] (135) Subtree rooted at node 251: /----- RrC4284_p1 [Raphanus raphanistrum] (4) /---100---+ | \----- Rsa1.0_09258.1_g00001.1 [Raphanus sativus] (75) | /-100+ /----- GSBRNA2T00127418001 [Brassica napus] (35) | | /-100+ | | | \----- XP_013603658.1 [Brassica oleracea] (36) | \-100+ /-100+ | /----- GSBRNA2T00078169001 [Brassica napus] (38) | | \-100+ | | \----- XP_009117336.1 [Brassica rapa] (89) | | | \-------------------- 676720270 [Sisymbrium irio] (79) | /-93-+ /----- GSBRNA2T00149788001 [Brassica napus] (7) | | /-100+ | | | \----- XP_013635294.1 [Brassica oleracea] (85) | | /-100+ | | | | /----- Rsa1.0_00126.1_g00014.1 [Raphanus sativus] (8) | | | \-100+ /-100-+ \---100---+ \----- RrC8195_p1 [Raphanus raphanistrum] (91) | | | | | | /----- GSBRNA2T00032910001 [Brassica napus] (48) | | \---100---+ | | \----- XP_009140386.1 [Brassica rapa] (77) | | | \------------------------------ Tp4g01740 [Thellungiella parvula] (57) | | /----- Csa07g052840.1 [Camelina sativa] (6) | /-100+ /-99-+ | \----- Csa09g087040.1 [Camelina sativa] (170) | | /-100+ | | | \---------- Csa16g044500.1 [Camelina sativa] (20) | | /-100+ | | | | /----- Carubv10025041m [Capsella rubella] (60) | | | \---100---+ | | /-100+ \----- Cagra.5392s0006.1.p [Capsella grandiflora] (95) | | | | /------100-----+ | | \-------------------- Bostr.19427s0042.1.p [Boechera stricta] (120) | | \----100---+ | | | /---------- AT2G22750.2 [Arabidopsis thaliana] (81) | | | | | | \------95------+ /----- Araha.52102s0003.1.p [Arabidopsis halleri] (129) | | \-100+ | | \----- 481136 [Arabidopsis lyrata] (145) | | | \----------------------------------------- Thhalv10000426m [Eutrema salsugineum] (29) | | /---------- GSBRNA2T00093566001 [Brassica napus] (11) | | | /--------100--------+ /----- XP_009109398.1 [Brassica rapa] (49) | | \-76-+ | | \----- GSBRNA2T00025662001 [Brassica napus] (115) | | | | /--------------- Rsa1.0_00426.1_g00002.1 [Raphanus sativus] (14) | | | | | | /----- XP_013593134.1 [Brassica oleracea] (21) | /--97-+ /-100+ /-100+ /-100+ | | | | | \----- GSBRNA2T00131181001 [Brassica napus] (62) | | | | | \-100+ | | | | | | /----- XP_009132646.1 [Brassica rapa] (42) | | | | /-95-+ \-100+ | | | | | | \----- GSBRNA2T00121613001 [Brassica napus] (47) | | /-100+ | | | | | | | \-51-+ \-------------------- 676765826 [Sisymbrium irio] (64) | | | | | | | | | \------------------------- Tp7g35490 [Thellungiella parvula] (55) | | | | | | | \------------------------------------ Thhalv10025715m [Eutrema salsugineum] (138) | | /-58-+ --97-+ | | | /---------- Csa11g003660.1 [Camelina sativa] (70) | | | | | | | | | /-100+ /----- Cagra.6066s0006.1.p [Capsella grandiflora] (180) | | | | | \-100+ | | /-100+ \------------97-----------+ \----- Carubv10006834m [Capsella rubella] (113) | | | | | | | | | \--------------- Bostr.25542s0234.1.p [Boechera stricta] (76) | \-100+ | | | \---------------------------------------------- AT4G37850.1 [Arabidopsis thaliana] (130) | | | \--------------------------------------------------- AA30G00292 [Aethionema arabicum] (51) | \------------------------------------------------------------- XP_010531324.1 [Tarenaya hassleriana] (72) Subtree rooted at node 278: /----- Neem_25444_f_1 [Azadirachta indica] (2) /-100+ | \----- Neem_9783_f_4 [Azadirachta indica] (127) /------------------------100-----------------------+ | | /----- orange1.1g021208m [Citrus sinensis] (27) | \-100+ | \----- Ciclev10028925m [Citrus clementina] (73) | | /----- (196) | /-----------55-----------+ | | \----- Neem_3598_f_2 [Azadirachta indica] (33) | | | | /----- Eucgr.H02386.1.p [Eucalyptus grandis] (37) | | /-100+ | | | \----- EcC040884.10 [Eucalyptus camaldulensis] (119) | | /-99-+ | | | | /----- Eucgr.H02387.1.p [Eucalyptus grandis] (190) | | | \-100+ | | /-100+ \----- EcC036168.10 [Eucalyptus camaldulensis] (134) | /-------94------+ | | | | | | | /----- EcC052750.30 [Eucalyptus camaldulensis] (82) | | | | \---100---+ | | | | \----- Eucgr.H02385.1.p [Eucalyptus grandis] (96) | | | /-70-+ | | | | | /----- Eucgr.H02398.1.p [Eucalyptus grandis] (78) | | | | | /-93-+ | | | | | | \----- EcC013799.10 [Eucalyptus camaldulensis] (84) | | | | \---100---+ | | \-81-+ \---------- Eucgr.H02396.1.p [Eucalyptus grandis] (122) | | | | | | /--------------- Eucgr.H02391.1.p [Eucalyptus grandis] (61) | | | | | | | | /----- EcC029832.10 [Eucalyptus camaldulensis] (136) | | \---100---+ /-100+ | | | | \----- Eucgr.H02390.1.p [Eucalyptus grandis] (142) | | \-100+ | | \---------- Eucgr.H02389.1.p [Eucalyptus grandis] (140) | | | /-99-+ /----- (251) --100+ | | /--------------100-------------+ | | | | \----- XP_010555430.1 [Tarenaya hassleriana] (18) | | | | | | | | /------------------------------ evm.model.supercontig_129.37 [Carica papaya] (16) | | | | | | | | /-91-+ | /----- Ciclev10027158m [Citrus clementina] (31) | | | | | | /-100+ | | | | | | | \----- orange1.1g037441m [Citrus sinensis] (68) | | | | | | /------100-----+ | | | | \--99-+ | \---------- Neem_3715_f_1 [Azadirachta indica] (124) | | | | | | | | | | | | /--------------- Gh_A11G1897 [Gossypium hirsutum] (32) | | | | | | | | | | | | | | /----- Gorai.007G228900.1 [Gossypium raimondii] (88) | | | | \-93-+ /-100+ /-100+ | | | | | | | | \----- Gh_D11G2073 [Gossypium hirsutum] (100) | | | | | | \-51-+ | | \-80-+ | | \---------- Cotton_A_35960_BGI-A2_v1.0 [Gossypium arboreum] (143) | | | | | | /-99-+ | | | /----- Cotton_A_29912_BGI-A2_v1.0 [Gossypium arboreum] (34) | | | | \-100+ /-100+ | | | | | | \----- Gh_A02G1414 [Gossypium hirsutum] (97) | | | | | /-100+ | | | | | | | /----- Gh_D03G0305 [Gossypium hirsutum] (71) | | | | | | \-100+ | | | | \-100+ \----- Gorai.003G034700.1 [Gossypium raimondii] (132) | | | | | | | | | \--------------- Thecc1EG000895t1 [Theobroma cacao] (80) | | | | | | | \----------------------------------------- Eucgr.I00634.1.p [Eucalyptus grandis] (54) | | | | | | /------------------------------ XP_010548842.1 [Tarenaya hassleriana] (10) | | | | | | | | /----- 676750788 [Sisymbrium irio] (26) | | | | /------76------+ \-97-+ | | | \----- Tp3g27680 [Thellungiella parvula] (39) | | | | | | | | /---------- XP_009136241.1 [Brassica rapa] (63) | \---------100--------+ | | | | /-100+ | /----- XP_013627871.1 [Brassica oleracea] (67) | | | | /-100+-100+ | | | | | | \----- GSBRNA2T00149992001 [Brassica napus] (120) | | | | | | | | | \-100+ \---------- GSBRNA2T00155054001 [Brassica napus] (92) | \-99-+ | | | | /----- RrC1871_p5 [Raphanus raphanistrum] (112) | | \---100---+ | | \----- Rsa1.0_16428.1_g00001.1 [Raphanus sativus] (121) | | | \------------------------- AA123G00123 [Aethionema arabicum] (69) | \-------------------------------------------------------- evm.model.supercontig_20.63 [Carica papaya] (123) Root part of tree: /------------------------------------------------------------------ Thecc1EG006357t1 [Theobroma cacao] (1) | | /------------- (278) |-------------------------99-------------------------+ | \------------- Eucgr.I02518.1.p [Eucalyptus grandis] (74) | | /------------- Gh_A04G1091 [Gossypium hirsutum] (5) | /-----100----+ | | \------------- Cotton_A_08820_BGI-A2_v1.0 [Gossypium arboreum] (53) + /-----100-----+ | | | /------------- Gh_D04G1698 [Gossypium hirsutum] (45) | | \-----100----+ | /-----100----+ \------------- Gorai.012G161900.1 [Gossypium raimondii] (65) | | | | | \---------------------------------------- Gorai.012G161700.1 [Gossypium raimondii] (126) | | | | /------------- Cotton_A_16748_BGI-A2_v1.0 [Gossypium arboreum] (22) \-----97-----+ /-----100----+ | | \------------- Gh_A01G1502 [Gossypium hirsutum] (93) | /------82-----+ | | \-------------------------- Gh_D01G1748 [Gossypium hirsutum] (139) \-----100----+ \---------------------------------------- Gorai.002G211500.1 [Gossypium raimondii] (30) |