PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1871_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 267aa    MW: 29619.1 Da    PI: 9.6054
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1871_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84e-1394141355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r h ++ErrRR+++ ++f  L +++P +     kK +Ka++L  +++Y+k+Lq
  RrC1871_p5  94 RDHIMAERRRREKLSQRFIALSTIVPGL-----KKTDKASVLGGTIKYLKHLQ 141
                 5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.74591140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1094141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1695153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-1795157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-1296145No hitNo description
SMARTSM003533.0E-1397146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MMTSFPTPEE LNDILSLPSL QTMEPQLYSH QSPVVTTLNA EAAQQLKHRS YMNTTTNQCS  60
SGFGEYGVMG DLQPKKESTL LAQRKMSRGV SQARDHIMAE RRRREKLSQR FIALSTIVPG  120
LKKTDKASVL GGTIKYLKHL QDRVSFLEEQ ASQKTIESVV YLNKSRLSVA DKELDCIALP  180
EIEARSSGKN VLIRVHCERR KGVVEITMAA VEKLSLTVIN SSVITFGSNS IHLTIISQMG  240
EGFNITTKDV ATSIKSSLEA FMNANLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104ERRRRE
2100105RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489839.10.0PREDICTED: transcription factor bHLH25-like isoform X1
RefseqXP_018489840.10.0PREDICTED: transcription factor bHLH25-like isoform X2
TrEMBLA0A3P6BEX60.0A0A3P6BEX6_BRAOL; Uncharacterized protein
STRINGBo3g088300.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-52bHLH family protein