PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_20.63
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 349aa    MW: 39211.8 Da    PI: 8.279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_20.63genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.9e-13169216355
                                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  evm.model.supercontig_20.63 169 QDHIMAERKRREKLSQRFIALSAIIPGL-----KKMDKASVLGDAIKYLKQLQ 216
                                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.974166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10169216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16169227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-16170227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-12171220No hitNo description
SMARTSM003532.1E-14172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEKSSSSGLF ELGIEDCGFI HQWQMNPLDE LSILPSTAAF EENLQQYSCT FQAFNLRPSA  60
NTYNNGIDRP SKQLKSNNWN SSKPYLTSIP QAAVSQNSAT LSFANANNQV MSFMKPKEEA  120
AICAENIHIL PADILASQGS FRKQNHAFKA CQGSSNKSST NTARLSQTQD HIMAERKRRE  180
KLSQRFIALS AIIPGLKKMD KASVLGDAIK YLKQLQERVK ILEEDTRKKT IESVIFVKKS  240
QLSMESDQNS FSDENFSSCP YDEPLPEIEV RFCDKNVLIR IHCEKRKGVL EKTIAEVEKI  300
HLTIINSSLM TFGSSALDVT IIAQMDVEFK MSVKDLVKHL RSVFELLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-14170219857Transcription factor MYC2
5gnj_B4e-14170219857Transcription factor MYC2
5gnj_E4e-14170219857Transcription factor MYC2
5gnj_F4e-14170219857Transcription factor MYC2
5gnj_G4e-14170219857Transcription factor MYC2
5gnj_I4e-14170219857Transcription factor MYC2
5gnj_M4e-14170219857Transcription factor MYC2
5gnj_N4e-14170219857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRE
2175180RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_20.63
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021903737.10.0transcription factor bHLH18-like isoform X1
RefseqXP_021903738.10.0transcription factor bHLH18-like isoform X1
RefseqXP_021903739.10.0transcription factor bHLH18-like isoform X1
SwissprotQ9T0721e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2I4GKM41e-147A0A2I4GKM4_JUGRE; transcription factor bHLH25-like
STRINGevm.model.supercontig_20.630.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-64bHLH family protein