PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00032912001
Common NameGSBRNA2T00032912001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 301aa    MW: 33993.1 Da    PI: 7.1687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00032912001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-10119165455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  GSBRNA2T00032912001 119 EHVMAERKRREKLSEKFIALSALLPGL-----KKADKITVLDDAISRVKQLQ 165
                          699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.322115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-15119179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-8119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.53E-10120169No hitNo description
SuperFamilySSF474594.06E-15120177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-13121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDADFFSTDF SLENIDFDFN IHEEMNVTPV EASMHTQRAH YSSSFDHQMN FDFLKEKPKP  60
AVKEMMNINN KSRVISFDFS SNVSSSPAEE DIIMDRLVSC GSKRKACSSA TRSPVLAKEH  120
VMAERKRREK LSEKFIALSA LLPGLKKADK ITVLDDAISR VKQLQEQIRK LKDEKEARGE  180
MKSMILVKKS KVFFDEEPYV ASSSSSSSSS CHAKFDQLLP EIEAKVVQKD VLIRIHCEKS  240
KGCMLNILNT IENLQLRIEN SIVLPFGDST LDITVLAQME KDFSASALKD LIRNLRLSMV  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128ERKRRE
2124129RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and leaves. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00032912001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746953.10.0transcription factor bHLH19
RefseqXP_018513976.10.0PREDICTED: transcription factor bHLH19
SwissprotQ1PF161e-158BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A078GK570.0A0A078GK57_BRANA; BnaA04g13210D protein
STRINGBra030208.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-149bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]