PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00426.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 315aa    MW: 35344.6 Da    PI: 9.2959
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00426.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12138184455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               h ++Er+RR+++ ++f  L +l+P +     kK++Ka++L  A ++Ik+Lq
  Rsa1.0_00426.1_g00002.1 138 DHIIAERKRREKLTQRFVALSSLVPGL-----KKMDKASVLGDALKHIKYLQ 184
                              699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.066134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16138197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10138184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-16139202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.75E-11139187No hitNo description
SMARTSM003533.1E-14140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNSIVGEIHE GQHTLPHTFS TLRTTINDPS YDDLMEVKPS KILKTTYMSP KLPPPPPSFP  60
LPPNSKTHLH HQPASRILSF ENASPNAMDH EYAPAYLDST INPKVEGGAP PSRMNEPINR  120
KGTKRAQPLH RNQTNAQDHI IAERKRREKL TQRFVALSSL VPGLKKMDKA SVLGDALKHI  180
KYLQEKVGEF EEQKRERRLE SVVLVKKSKL ILDDNNQSST SSCCEDGSSG LDLPEIEVRF  240
SDKDVLIKIL CEKQKGHVAK IMAEIEKFNF SVTNSSVLPF GPTLDITIIA KKESDFDMTL  300
MDVVKSLRSA LSKFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13138194864Transcription factor MYC2
5gnj_B5e-13138194864Transcription factor MYC2
5gnj_E5e-13138194864Transcription factor MYC2
5gnj_F5e-13138194864Transcription factor MYC2
5gnj_G5e-13138194864Transcription factor MYC2
5gnj_I5e-13138194864Transcription factor MYC2
5gnj_M5e-13138194864Transcription factor MYC2
5gnj_N5e-13138194864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147ERKRRE
2143148RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00426.1_g00002.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885670.0AF488567.1 Arabidopsis thaliana clone bHLH025 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469673.10.0PREDICTED: transcription factor bHLH25
SwissprotQ9T0721e-164BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A398AI440.0A0A398AI44_BRACM; Uncharacterized protein
TrEMBLM4D5N30.0M4D5N3_BRARP; Uncharacterized protein
STRINGBra011790.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-153bHLH family protein