PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010555452.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 311aa    MW: 35236.1 Da    PI: 5.3156
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010555452.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331e-10133179455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+ + ++f  L +llP +     kK +K+++Le A+ +Ik+Lq
  XP_010555452.1 133 EHVLAERKRREMLSERFIALSSLLPGL-----KKSDKVTVLENAIMHIKELQ 179
                     5899***********************.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.634129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-8133179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14133194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-14134192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.42E-10134182No hitNo description
SMARTSM003531.6E-10135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEDFFLPEFT FDHFDFDLYE EDLLPEVVTQ KSQTNPHARH HVNDQSCRLE FSCERPMKKA  60
KINGWNSSSS SPIVADPLFP SSSPRLISFD CCNVSSRVTR NDFNVEECGG SPTFGQGTTR  120
ESARVRSSVL AKEHVLAERK RREMLSERFI ALSSLLPGLK KSDKVTVLEN AIMHIKELQE  180
RVMQLGEEKE ASKETESMIF VKKTKIFIEE NDDDTTHSST LSSYEDFNLM LPEIEARVSG  240
EDVLIRIHCK KSKGSMIVLL NEIEKLHLSV LSSIALPFGD STLDITVLAK KEEDFSMTGK  300
DLVKNLRLAI L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010555452.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010555452.10.0PREDICTED: transcription factor bHLH19-like
TrEMBLR0HWW46e-76R0HWW4_9BRAS; Uncharacterized protein
STRINGXP_010555452.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-77bHLH family protein