PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1897
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 362aa    MW: 40084.1 Da    PI: 7.2635
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1897genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12183229455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Gh_A11G1897 183 DHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 229
                  699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-10183229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-17183243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-17183241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-12184233No hitNo description
SMARTSM003534.3E-14185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDSSSAKWLS ELGMDEYNII HQCHMNTLAE LTTADDLATA LVAGGNLKQS FSSESYSSYP  60
NFNTKNTTTT FSGSSSIETP DYRPAKHLKT THHHPVPPKP SSPTSQILSF GNSNSLPATS  120
HHHFYNVDNT VNPKDETVSS GNMNFLPPVT NGPYESTNYA PKIINHGVKR TYSMTRTPSV  180
AQDHIIAERK RREKLSQRFI ALSAIVPGLK KMDKASVLGD AIKYVKQLQE RVKVLEEQTK  240
KRTVESVVFV RKSQLSADDE SSSCEDNNSE LGPSSDAALP EIEARVSDHD VLVRIHCENH  300
KGFVTKILSE IENLHLSVVN STALPFGNST LDITIIAKKD SEFNITVKDL VKDIRLALLK  360
FM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13183238863Transcription factor MYC2
5gnj_B1e-13183238863Transcription factor MYC2
5gnj_E1e-13183238863Transcription factor MYC2
5gnj_F1e-13183238863Transcription factor MYC2
5gnj_G1e-13183238863Transcription factor MYC2
5gnj_I1e-13183238863Transcription factor MYC2
5gnj_M1e-13183238863Transcription factor MYC2
5gnj_N1e-13183238863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192ERKRRE
2188193RKRREK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5783171e-42JX578317.1 Gossypium hirsutum clone NBRI_GE10312 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016679974.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_016679980.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1U8IPD40.0A0A1U8IPD4_GOSHI; transcription factor bHLH18-like
STRINGGorai.007G228900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-67bHLH family protein