PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G087600.1

Common Name

B456_008G087600, LOC105763496

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 314aa MW: 35638.4 Da PI: 6.2447

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G087600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.2e-12	135	181	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L l+P + kK +Ka+iL A+ Y+k+Lq Gorai.008G087600.1 135 DHVLAERKRREKLSQSFISLSALIPGL-----KKTDKASILGDAITYLKKLQ 181 58899********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.951	131	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-16	135	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-16	136	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.19E-12	136	184	No hit	No description
Pfam	PF00010	1.2E-9	136	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-13	137	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MEIASGKWLS QLEMEDPTLF PQYQMINPID YSFHDFNFHS ENYSSNPYYT IGNSFIETSQ 60 EVDDFKRQMK QLKTNSWNSC ITENNIPPPP KPSSSSSSSH LISFDNSNSY YAVDYDVKPK 120 NEVGSFTRIP LHAQDHVLAE RKRREKLSQS FISLSALIPG LKKTDKASIL GDAITYLKKL 180 QDRVNVLEEQ VAKKTMESVI FVRKTQIYAD DETSSSDESV HGQSNNNPFP EIEARVSDKD 240 VLIRIHCKNN KGCISNIINE VEKLHLFVLN SHVLPFGQAT LDITITAQME AEFSMTVKDL 300 VKSLRLALLK FIM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	144	ERKRRE
2	140	145	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437188.1	0.0	PREDICTED: transcription factor bHLH19-like
TrEMBL	A0A0D2PRC4	0.0	A0A0D2PRC4_GOSRA; Uncharacterized protein
STRING	Gorai.008G087600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	5e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G087600.1
Entrez Gene	105763496

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]