PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG000894t1
Common NameTCM_000894
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 330aa    MW: 37146.2 Da    PI: 6.944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG000894t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12153199455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR+++ ++f  L  l+P +     kK +Ka++L  A++Y+k+Lq
  Thecc1EG000894t1 153 DHVIAERKRREKLSQRFISLSALIPGL-----KKTDKASVLGDAIKYLKQLQ 199
                       6999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.186149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-16153211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10153199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-11154202No hitNo description
SuperFamilySSF474594.71E-16154215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-14155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEIASGKWLS ELEMEDSTFL PQYQMMNPMD YAFDDLNFQS FSSESYSSYQ NIDQKISSHN  60
NMNGSCIGAS HQVDNFQRPM KQLKTNSPNS CITENIPPKA SSSPSSHIIS FDNWNSSPAI  120
SQQYYGLDCA VKPKNEVSKR VGSLTRTPLH AQDHVIAERK RREKLSQRFI SLSALIPGLK  180
KTDKASVLGD AIKYLKQLQE RVTTLEEQVA KKTMESVIFV RKTQIFADDE TSSSDENFDS  240
HSNKPLPEIE ARVADKDVLI RIHCEKNKGC IPNIINEVEK LHLSVLNTNV LPFGQATQDI  300
TIVAKMEAEF SMTVKDLVKS LRMALLKFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERKRRE
2158163RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047664.10.0PREDICTED: transcription factor bHLH18 isoform X2
TrEMBLA0A061DIU40.0A0A061DIU4_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOX918210.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-65bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]