PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D03G0305
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 359aa    MW: 40036.4 Da    PI: 7.5296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D03G0305genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH437.9e-14181227455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   h ++Er+RR+++N++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Gh_D03G0305 181 DHIMAERKRREKLNQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 227
                  699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.923177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-18181239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-18181241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.61E-14182231No hitNo description
SMARTSM003531.6E-15183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDSSSAKWLS ELGMDEYDII HQCHVNSLAE LTAGEDITAT AFTRGNFKQS SFSSESYSSY  60
PNFTTTNNCV FSINEASDRP IKQLKIGTSW NSSTITNIDH VPVPKKPSSP TSHILSFEKP  120
AASLPANSKQ LYGIDNIVKP KDETVCSGNN MNYFGQFQST NYTAKNSRSY SMTRSPSHAQ  180
DHIMAERKRR EKLNQRFIAL SAIVPGLKKM DKASVLGDAI KYVKQLQERL KVLEEQTKKR  240
TVESVVFVKK CQLLSADDES SSCEENSDGQ SSDAALPEIE AKVSDNDVLI RIHCEKHKGF  300
IAKILSEIEK LRLSIVNTNA LPFGNSTLDI TIIAEKDAEF NMTVKDLVKD LRMALLKFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-14181244869Transcription factor MYC2
5gnj_B9e-14181244869Transcription factor MYC2
5gnj_E9e-14181244869Transcription factor MYC2
5gnj_F9e-14181244869Transcription factor MYC2
5gnj_G9e-14181244869Transcription factor MYC2
5gnj_I9e-14181244869Transcription factor MYC2
5gnj_M9e-14181244869Transcription factor MYC2
5gnj_N9e-14181244869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190ERKRRE
2186191RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016741309.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1U8NTL70.0A0A1U8NTL7_GOSHI; transcription factor bHLH18-like
TrEMBLA0A2P5R3760.0A0A2P5R376_GOSBA; Uncharacterized protein
STRINGGorai.003G034700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-71bHLH family protein