PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_16748_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 346aa MW: 39014 Da PI: 7.4731 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.6e-13 | 177 | 224 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq Cotton_A_16748_BGI-A2_v1.0 177 QDHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 224 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.069 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-10 | 177 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-17 | 177 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-17 | 178 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.93E-13 | 179 | 228 | No hit | No description |
SMART | SM00353 | 4.3E-15 | 180 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MEISSIRELP EFVRLLSSYF LFLYVIDSFV LSTVCLQQMS NPQGIMEDPN LFHQWHMNSL 60 DELSFLPVTA AVDNYPDYSG AIGRPPKQLK TNCWGDSCNV SNLEASVFSP DALSFAASNN 120 VINPRGILKP KEEEAACSKS MEPFPSEILF SQNPFGTQNY VLKGCHGSKR LGISQTQDHI 180 MAERKRREKL SQRFIALSAI VPGLKKMDKA SVLGDAIKYL KQLQEKVKTL EELTRKKSME 240 SVVFVKKSHL SAADNIDDFH QPLPEIEARF CDKSVLVRIH CEKRKGFPEK IMSELEKSHL 300 TVINSNTVTF GSSAVDITIV AQMDIEFCMT VKDFVKKLRS AFESLM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-15 | 171 | 242 | 1 | 74 | Transcription factor MYC2 |
5gnj_B | 4e-15 | 171 | 242 | 1 | 74 | Transcription factor MYC2 |
5gnj_E | 4e-15 | 171 | 242 | 1 | 74 | Transcription factor MYC2 |
5gnj_F | 4e-15 | 171 | 242 | 1 | 74 | Transcription factor MYC2 |
5gnj_G | 4e-15 | 171 | 242 | 1 | 74 | Transcription factor MYC2 |
5gnj_I | 4e-15 | 171 | 242 | 1 | 74 | Transcription factor MYC2 |
5gnj_M | 4e-15 | 171 | 242 | 1 | 74 | Transcription factor MYC2 |
5gnj_N | 4e-15 | 171 | 242 | 1 | 74 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 187 | ERKRRE |
2 | 183 | 188 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017622075.1 | 0.0 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | A0A1U8LEG0 | 0.0 | A0A1U8LEG0_GOSHI; transcription factor bHLH25-like | ||||
STRING | Gorai.002G211500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-59 | bHLH family protein |