PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp4g01750
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bHLH
Protein Properties Length: 293aa    MW: 33805.2 Da    PI: 6.7904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp4g01750genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10119165455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h  +Er+RR+++ + f  L  llP +     kK +K++iL  A+  +k+Lq
  Tp4g01750 119 EHVLAERKRREKLSENFIALSALLPGL-----KKADKITILDDAISRVKQLQ 165
                5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.024115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-15119181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-15119181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-7119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.85E-9120169No hitNo description
SMARTSM003538.3E-12121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDEDFFLNDF SLEDIDFDFN IFEELNVSPI EASMHTQRAK FSSSFDHQMH LEFLKEKPKP  60
TVKKMMKINN KPRVISFDFS SNVSSSPASE DIIMDRLVRC GTKRKVCSPA TRSPVLAKEH  120
VLAERKRREK LSENFIALSA LLPGLKKADK ITILDDAISR VKQLQEQTRK LKEEKEATRE  180
MESMILVKKS KVFFDEDLCS SSSDHDQFDQ PLPQIEAKVI QNEVLIRIHC EKSKWCMINI  240
LNKIENLQLR IENSIVLPFG DSTLDITVLA KMEKDFPVSV LKDLVRDLRL AMV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123128ERKRRE
2124129RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp4g01750
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018513976.11e-171PREDICTED: transcription factor bHLH19
SwissprotQ1PF161e-159BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A397ZPD71e-170A0A397ZPD7_BRACM; Uncharacterized protein
STRINGBra030208.1-P1e-170(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-150bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]