PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D04G1698
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 302aa    MW: 34003.2 Da    PI: 7.1912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D04G1698genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407e-13123170355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Gh_D04G1698 123 KDHIMAERKRREKLSEKFIALSALVPGL-----KKMDKATVLGDAIKYMKQLQ 170
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.183120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10123170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-19124182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.41E-14125174No hitNo description
SuperFamilySSF474599.81E-18125187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEIPPIGELP EMGLLENPNI FNPWCIDELS VLPVPVPVSA SFGDNSQHYE ASSSRPATID  60
KPQKQLKITN CCKSGKTHIS TDIQSSFSPH TLPFSSSNYN PFGNQNFLVK GYHDTNNRIS  120
QSKDHIMAER KRREKLSEKF IALSALVPGL KKMDKATVLG DAIKYMKQLQ EKVKTLEEQA  180
RQKSIESVVF VKKYQLLGDI NAQFSSWDEI SSAPFDEPLP ETEARFCDQS VLISIHCEKR  240
KGFPEKIISA IEKFNLTVIN SNVMTFGSCA LHITIVAQMD MEFCMTIKEL VKNLHSAFIF  300
LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13124182866Transcription factor MYC2
5gnj_B3e-13124182866Transcription factor MYC2
5gnj_E3e-13124182866Transcription factor MYC2
5gnj_F3e-13124182866Transcription factor MYC2
5gnj_G3e-13124182866Transcription factor MYC2
5gnj_I3e-13124182866Transcription factor MYC2
5gnj_M3e-13124182866Transcription factor MYC2
5gnj_N3e-13124182866Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133ERKRRE
2129134RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6209208e-90JX620920.1 Gossypium hirsutum clone NBRI_GE67296 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016679471.10.0PREDICTED: transcription factor bHLH25-like
RefseqXP_016679472.10.0PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0721e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1U8IMX80.0A0A1U8IMX8_GOSHI; transcription factor bHLH25-like
STRINGGorai.012G161900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-57bHLH family protein