PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013603658.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 323aa MW: 36177.4 Da PI: 8.7301 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.8 | 8e-13 | 147 | 194 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ ++f L l+P + kK++Ka++L A+++Ik+Lq XP_013603658.1 147 QEHILAERKRREKLTQRFVALSALIPGL-----KKMDKASVLGDAIKHIKYLQ 194 56999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.656 | 144 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-10 | 147 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 148 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-16 | 148 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.68E-13 | 149 | 197 | No hit | No description |
SMART | SM00353 | 6.4E-15 | 150 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MATTMNVWST KWTSGLDIEE YNIIHQYHMN SLLGDFPQSL SSLDDTTTCY NFGASCNDDL 60 VEEKPSKILK TTHESPNLHL YPFPNSTSPH PQPSSRILSF EKTGLKVMNH KSPNLIFSPM 120 EKVGSADLIR RETKKAQPLT RSPSNAQEHI LAERKRREKL TQRFVALSAL IPGLKKMDKA 180 SVLGDAIKHI KYLQESVNEY EKQKKGRTLE SVVLVNKSQL VLDELHKLSP SFSDGNRDYS 240 SSNLPEIEVR VSGKDVLIKI ICEKQKGNLI KIMGEIEKLG LSITNSSLLP FGPTSDISII 300 AQKTSDFDMK VEDVVKSLSY GLS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 157 | ERKRRE |
2 | 153 | 158 | RKRREK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013603658.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603658.1 | 0.0 | PREDICTED: transcription factor bHLH18-like | ||||
Swissprot | Q1PF17 | 1e-145 | BH018_ARATH; Transcription factor bHLH18 | ||||
TrEMBL | A0A3P6GR78 | 0.0 | A0A3P6GR78_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g100910.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM492 | 27 | 146 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22750.2 | 1e-147 | bHLH family protein |
Publications ? help Back to Top | |||
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