PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006834m
Common NameCARUB_v10006834mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 333aa    MW: 37797.3 Da    PI: 7.1719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006834mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.1e-12155201455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A ++Ik+Lq
  Carubv10006834m 155 DHIIAERKRREKLTQRFVALSALVPGL-----KKMDKASVLGDALKHIKYLQ 201
                      699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.983151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-10155201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-17155216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.56E-11156204No hitNo description
SuperFamilySSF474597.72E-17156220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-14157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MNMLSTRWFS EQEIEENSII QQFHMNSLVG EVHEAQYTLP HSFPTNFDPS YDDLVEMKPS  60
KILKTTYILP QLPPPHSSPL PPNSKPHLHH QPSSTILSFE NAGSHVMDHE YSPTYLNSIF  120
SSKVEVEVPP NRNSEPRKET KRVQPLPRSQ SNAQDHIIAE RKRREKLTQR FVALSALVPG  180
LKKMDKASVL GDALKHIKYL QEKVGELEEQ KKERRLESMV LVKKSKLILD DNNQSSSSSS  240
CEDGSEGMDL PEIEVRFSDK DVLIKILCEK QKGHIAKIMA EIEKFRFSIT NSSVLPFGPT  300
LDITIVAKKE SDFDMTLMDV VKSLRSALSK FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13155211864Transcription factor MYC2
5gnj_B2e-13155211864Transcription factor MYC2
5gnj_E2e-13155211864Transcription factor MYC2
5gnj_F2e-13155211864Transcription factor MYC2
5gnj_G2e-13155211864Transcription factor MYC2
5gnj_I2e-13155211864Transcription factor MYC2
5gnj_M2e-13155211864Transcription factor MYC2
5gnj_N2e-13155211864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164ERKRRE
2160165RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10006834m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885670.0AF488567.1 Arabidopsis thaliana clone bHLH025 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006282858.10.0transcription factor bHLH25 isoform X1
SwissprotQ9T0720.0BH025_ARATH; Transcription factor bHLH25
TrEMBLR0F3250.0R0F325_9BRAS; Uncharacterized protein
STRINGXP_006282858.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-156bHLH family protein