PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp4g01740

Organism

Thellungiella parvula

Taxonomic ID

98039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella

Family

bHLH

Protein Properties

Length: 289aa MW: 32093.9 Da PI: 9.4205

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp4g01740	genome	thellungiella	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.5	4.1e-12	114	160	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L l+P + kK++Ka++L A++++k+Lq Tp4g01740 114 DHILAERKRREKLTQRFVALSALIPGL-----KKMDKASVLGDAIKHLKHLQ 160 5899*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.161	110	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-10	114	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-16	114	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-16	115	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.73E-12	115	164	No hit	No description
SMART	SM00353	9.8E-15	116	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MNSLVGDFPQ SLSSLDDTTT CYNFDASCTD DLVKEKPSKI LKTTHVAPKL HPPPPNTQPF 60 SRILSFEKKG LKVMNQNSPN LIFSHKKEVG SPDLKTRGTK RAQPLTRSQS NAQDHILAER 120 KRREKLTQRF VALSALIPGL KKMDKASVLG DAIKHLKHLQ ESVKEYEEQK KERTLESMVL 180 VKKSVLVLDD DHQLSSSSSD GNRDCSSSNL PEIEVRVSGK DVLIKILCEK QKGHVIKIMG 240 EIEKIGLSIT NSSVLPFGPT FDISIIAQKT SDFEMKVEDV VKSLSCGLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	123	ERKRRE
2	119	124	RKRREK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00273	DAP	Transfer from AT2G22750	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp4g01740

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ446549	0.0	DQ446549.1 Arabidopsis thaliana clone pENTR221-At2g22750 basic helix-loop-helix family protein (At2g22750) mRNA, complete cds.
GenBank	DQ653015	0.0	DQ653015.1 Arabidopsis thaliana clone 0000017319_0000012121 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013746950.1	0.0	transcription factor bHLH18-like isoform X1
Swissprot	Q1PF17	1e-144	BH018_ARATH; Transcription factor bHLH18
TrEMBL	A0A3P6CFN3	0.0	A0A3P6CFN3_BRACM; Uncharacterized protein
STRING	Bra030210.1-P	1e-178	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM492	27	146

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22750.2	1e-135	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]